Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-54-dependent fis family transcriptional regulator | DUE52_29810 | Not Available | Negative | 7390409 - 7391710 | 48840.2 |
| trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miab | DUE52_29815 | Not Available | Negative | 7391732 - 7393156 | 53928.5 |
| outer membrane protein assembly factor | DUE52_29820 | Not Available | Negative | 7393308 - 7396010 | 103511.0 |
| rna methyltransferase | DUE52_29825 | Not Available | Positive | 7396009 - 7396776 | 28265.0 |
| hypothetical protein | DUE52_29830 | Not Available | Positive | 7396957 - 7400187 | 122167.0 |
| dna-binding response regulator | DUE52_29835 | Not Available | Positive | 7400308 - 7400958 | 24271.6 |
| susc/raga family tonb-linked outer membrane protein | DUE52_29840 | Not Available | Positive | 7401230 - 7404397 | 115065.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DUE52_29845 | Not Available | Positive | 7404421 - 7405962 | 56217.6 |
| hypothetical protein | DUE52_29850 | Not Available | Positive | 7406191 - 7406640 | 16751.6 |
| nuclear transport factor 2 family protein | DUE52_29855 | Not Available | Negative | 7406850 - 7407722 | 31763.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
