Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4199 domain-containing protein | DUE52_26220 | Not Available | Positive | 6498306 - 6498833 | 19319.8 |
| gliding motility-associated abc transporter permease subunit gldf | DUE52_26225 | Not Available | Positive | 6498939 - 6499667 | 26976.6 |
| vanz family protein | DUE52_26230 | Not Available | Positive | 6499669 - 6500016 | 13127.5 |
| mandelate racemase/muconate lactonizing enzyme family protein | DUE52_26235 | Not Available | Positive | 6500126 - 6501253 | 42066.6 |
| susc/raga family tonb-linked outer membrane protein | DUE52_26240 | Not Available | Positive | 6501424 - 6504774 | 122422.0 |
| ragb/susd family nutrient uptake outer membrane protein | DUE52_26245 | Not Available | Positive | 6504798 - 6506246 | 54233.7 |
| exo-alpha-sialidase | DUE52_26250 | Not Available | Positive | 6506293 - 6507525 | 46311.7 |
| exo-alpha-sialidase | DUE52_26255 | Not Available | Positive | 6507531 - 6508652 | 41225.5 |
| n-acetylneuraminate lyase | DUE52_26260 | Not Available | Positive | 6508684 - 6509652 | 35511.9 |
| galactose oxidase | DUE52_26265 | Not Available | Positive | 6509742 - 6510809 | 38080.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
