Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nad(p)-dependent oxidoreductase | DUE52_21485 | Not Available | Negative | 5349594 - 5350493 | 33337.8 |
| peptidylprolyl isomerase | DUE52_21490 | Not Available | Negative | 5350503 - 5351216 | 26951.6 |
| gnat family n-acetyltransferase | DUE52_21495 | Not Available | Negative | 5351312 - 5351755 | 16763.1 |
| hydroxymethylbilane synthase | DUE52_21500 | Not Available | Negative | 5351789 - 5352712 | 33552.3 |
| susc/raga family tonb-linked outer membrane protein | DUE52_21505 | Not Available | Positive | 5353025 - 5356171 | 115360.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DUE52_21510 | Not Available | Positive | 5356184 - 5357671 | 55441.9 |
| gamma-glutamyltransferase | DUE52_21515 | Not Available | Positive | 5357748 - 5359439 | 61145.9 |
| 30s ribosomal protein s6--l-glutamate ligase | DUE52_21520 | Not Available | Negative | 5359614 - 5360516 | 32271.3 |
| atp-dependent zinc protease | DUE52_21525 | Not Available | Negative | 5360585 - 5361061 | 18059.9 |
| dna polymerase iii subunit delta | DUE52_21530 | Not Available | Negative | 5361058 - 5362203 | 43164.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
