Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susd/ragb family nutrient-binding outer membrane lipoprotein | DUE52_20370 | Not Available | Negative | 5067010 - 5068704 | 62559.8 |
| susc/raga family tonb-linked outer membrane protein | DUE52_20375 | Not Available | Negative | 5068727 - 5072323 | 131516.0 |
| fecr family protein | DUE52_20380 | Not Available | Negative | 5072452 - 5073492 | 38963.0 |
| rna polymerase sigma-70 factor | DUE52_20385 | Not Available | Negative | 5073673 - 5074212 | 21379.2 |
| metallophosphoesterase | DUE52_20390 | Not Available | Negative | 5074393 - 5075787 | 53298.4 |
| regulator | DUE52_20395 | Not Available | Positive | 5075953 - 5078202 | 86416.9 |
| chbg/hpnk family deacetylase | DUE52_20400 | Not Available | Positive | 5078327 - 5079382 | 39011.6 |
| exo-alpha-sialidase | DUE52_20405 | Not Available | Positive | 5079387 - 5080580 | 44787.4 |
| hypothetical protein | DUE52_20410 | Not Available | Positive | 5080606 - 5082825 | 84203.7 |
| hypothetical protein | DUE52_20415 | Not Available | Positive | 5082956 - 5085181 | 85208.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
