Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | DUE52_01955 | Not Available | Positive | 495021 - 498053 | 111766.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | DUE52_01960 | Not Available | Positive | 498063 - 499574 | 55471.3 |
| ankyrin repeat domain-containing protein | DUE52_01965 | Not Available | Positive | 499746 - 501215 | 53185.6 |
| duf2271 domain-containing protein | DUE52_01970 | Not Available | Positive | 501220 - 501720 | 18208.0 |
| fad-binding oxidoreductase | DUE52_01975 | Not Available | Positive | 501735 - 503933 | 81858.4 |
| hypothetical protein | DUE52_01980 | Not Available | Positive | 504057 - 505625 | 59111.6 |
| fad:protein fmn transferase | DUE52_01985 | Not Available | Negative | 505635 - 506621 | 35885.3 |
| gfo/idh/moca family oxidoreductase | DUE52_01990 | Not Available | Negative | 506722 - 508047 | 49095.3 |
| transcriptional regulator | DUE52_01995 | Not Available | Negative | 508100 - 508450 | 13352.5 |
| type ii toxin-antitoxin system higb family toxin | DUE52_02000 | Not Available | Negative | 508447 - 508749 | 11735.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
