Larkinella punicea strain ZZJ9

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Larkinella

Description

Larkinella punicea strain ZZJ9 is characterized by having a single replicon, which is a significant trait for its genetic structure. This bacterium is cataloged under the accession number QOWE00000000.1, which is essential for referencing its genetic and genomic information in scientific studies. As a member of the genus Larkinella, L. punicea strain ZZJ9 contributes to the diversity of microbial life in its specific ecological niche. While specific environmental or ecological roles of this strain are not detailed, Larkinella species are generally known to inhabit various environments, including marine and terrestrial ecosystems. This adaptability to different habitats suggests that L. punicea strain ZZJ9 may play a role in nutrient cycling or interactions within microbial communities. The presence of a single replicon in L. punicea strain ZZJ9 may also indicate a streamlined genomic organization, potentially affecting its metabolic capabilities and ecological interactions. Understanding the genetic attributes of this strain can provide insights into its functional roles in the ecosystem. In summary, Larkinella punicea strain ZZJ9, with its single replicon and defined genetic accession, stands as an important representative of its genus, contributing to the complex tapestry of microbial life and its ecological implications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusLarkinella
SpeciesLarkinella punicea
Strainstrain ZZJ9

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Larkinella punicea strain ZZJ9 Contig60, whole genome shotgun

Gene Summary

Adenine Count

1929591 bp

Thymine Count

1930276 bp

Guanine Count

2055163 bp

Cytosine Count

2091296 bp

Genome Length

8006342 bp

Protein-coding Genes

6302 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
septum formation protein mafDUE52_16780Not AvailableNegative4153154 - 415373821735.3
gnat family n-acetyltransferaseDUE52_16785Not AvailablePositive4153708 - 415435224871.1
hypothetical proteinDUE52_16790Not AvailablePositive4154381 - 415631574931.5
marr family transcriptional regulatorDUE52_16795Not AvailablePositive4156456 - 415691718026.7
ycei family proteinDUE52_16800Not AvailablePositive4156985 - 415765923988.5
rna polymerase sigma-70 factorDUE52_16805Not AvailablePositive4157878 - 415857326753.9
duf4974 domain-containing proteinDUE52_16810Not AvailablePositive4158570 - 415957137950.3
susc/raga family tonb-linked outer membrane proteinDUE52_16815Not AvailablePositive4159693 - 4163073122215.0
ragb/susd family nutrient uptake outer membrane proteinDUE52_16820Not AvailablePositive4163115 - 416457854016.7
1,4-beta-xylanaseDUE52_16825Not AvailablePositive4164740 - 416580140795.8

Displaying genes 3331 – 3340 of 6346 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.