Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3-deoxy-8-phosphooctulonate synthase | DUE52_16730 | Not Available | Positive | 4140512 - 4141321 | 29141.4 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | DUE52_16735 | Not Available | Positive | 4141381 - 4142211 | 31227.1 |
| phytanoyl-coa dioxygenase | DUE52_16740 | Not Available | Positive | 4142416 - 4143435 | 39154.8 |
| duf2807 domain-containing protein | DUE52_16745 | Not Available | Negative | 4143633 - 4144391 | 26706.4 |
| pspc domain-containing protein | DUE52_16750 | Not Available | Negative | 4144451 - 4147012 | 93631.9 |
| padr family transcriptional regulator | DUE52_16755 | Not Available | Negative | 4147051 - 4147473 | 15614.7 |
| hypothetical protein | DUE52_16760 | Not Available | Positive | 4147767 - 4151150 | 125645.0 |
| thiamine diphosphokinase | DUE52_16765 | Not Available | Negative | 4151157 - 4151819 | 24900.7 |
| molybdenum cofactor guanylyltransferase | DUE52_16770 | Not Available | Negative | 4151952 - 4152650 | 25611.3 |
| cyclic pyranopterin monophosphate synthase moac | DUE52_16775 | Not Available | Negative | 4152628 - 4153098 | 16852.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
