Larkinella punicea strain ZZJ9

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Larkinella

Description

Larkinella punicea strain ZZJ9 is characterized by having a single replicon, which is a significant trait for its genetic structure. This bacterium is cataloged under the accession number QOWE00000000.1, which is essential for referencing its genetic and genomic information in scientific studies. As a member of the genus Larkinella, L. punicea strain ZZJ9 contributes to the diversity of microbial life in its specific ecological niche. While specific environmental or ecological roles of this strain are not detailed, Larkinella species are generally known to inhabit various environments, including marine and terrestrial ecosystems. This adaptability to different habitats suggests that L. punicea strain ZZJ9 may play a role in nutrient cycling or interactions within microbial communities. The presence of a single replicon in L. punicea strain ZZJ9 may also indicate a streamlined genomic organization, potentially affecting its metabolic capabilities and ecological interactions. Understanding the genetic attributes of this strain can provide insights into its functional roles in the ecosystem. In summary, Larkinella punicea strain ZZJ9, with its single replicon and defined genetic accession, stands as an important representative of its genus, contributing to the complex tapestry of microbial life and its ecological implications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusLarkinella
SpeciesLarkinella punicea
Strainstrain ZZJ9

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Larkinella punicea strain ZZJ9 Contig60, whole genome shotgun

Gene Summary

Adenine Count

1929591 bp

Thymine Count

1930276 bp

Guanine Count

2055163 bp

Cytosine Count

2091296 bp

Genome Length

8006342 bp

Protein-coding Genes

6302 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
susc/raga family tonb-linked outer membrane proteinDUE52_15815Not AvailableNegative3918887 - 3922267124010.0
fecr family proteinDUE52_15820Not AvailableNegative3922399 - 392348140959.0
sigma-70 family rna polymerase sigma factorDUE52_15825Not AvailableNegative3923573 - 392418123726.8
intradiol ring-cleavage dioxygenaseDUE52_15830Not AvailablePositive3924421 - 392514925765.9
pirinDUE52_15835Not AvailablePositive3925115 - 392587328223.4
thioredoxinDUE52_15840Not AvailableNegative3926027 - 392637412862.7
sigma-70 family rna polymerase sigma factorDUE52_15845Not AvailableNegative3926442 - 392699321359.4
serine acetyltransferaseDUE52_15850Not AvailableNegative3927272 - 392809630377.2
glucose sorbosone dehydrogenaseDUE52_15855Not AvailablePositive3928391 - 392960543806.4
methylated-dna--[protein]-cysteine s-methyltransferaseDUE52_15860Not AvailablePositive3929718 - 393019417553.2

Displaying genes 3141 – 3150 of 6346 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.