Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4976 domain-containing protein | DUE52_01390 | Not Available | Negative | 354715 - 356196 | 55555.9 |
| ragb/susd family nutrient uptake outer membrane protein | DUE52_01395 | Not Available | Negative | 356213 - 357856 | 61441.1 |
| susc/raga family tonb-linked outer membrane protein | DUE52_01400 | Not Available | Negative | 357873 - 361220 | 121663.0 |
| fecr family protein | DUE52_01405 | Not Available | Negative | 361392 - 362459 | 40570.4 |
| rna polymerase sigma factor | DUE52_01410 | Not Available | Negative | 362531 - 363133 | 23758.4 |
| s9 family peptidase | DUE52_01415 | Not Available | Positive | 363356 - 365569 | 84428.1 |
| uma2 family endonuclease | DUE52_01420 | Not Available | Negative | 365595 - 366167 | 22014.2 |
| dna-binding response regulator | DUE52_01425 | Not Available | Negative | 366318 - 367064 | 28269.8 |
| hypothetical protein | DUE52_01430 | Not Available | Negative | 367185 - 368351 | 43889.7 |
| hypothetical protein | DUE52_01435 | Not Available | Positive | 368618 - 368980 | 13860.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
