Larkinella punicea strain ZZJ9

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Larkinella

Description

Larkinella punicea strain ZZJ9 is characterized by having a single replicon, which is a significant trait for its genetic structure. This bacterium is cataloged under the accession number QOWE00000000.1, which is essential for referencing its genetic and genomic information in scientific studies. As a member of the genus Larkinella, L. punicea strain ZZJ9 contributes to the diversity of microbial life in its specific ecological niche. While specific environmental or ecological roles of this strain are not detailed, Larkinella species are generally known to inhabit various environments, including marine and terrestrial ecosystems. This adaptability to different habitats suggests that L. punicea strain ZZJ9 may play a role in nutrient cycling or interactions within microbial communities. The presence of a single replicon in L. punicea strain ZZJ9 may also indicate a streamlined genomic organization, potentially affecting its metabolic capabilities and ecological interactions. Understanding the genetic attributes of this strain can provide insights into its functional roles in the ecosystem. In summary, Larkinella punicea strain ZZJ9, with its single replicon and defined genetic accession, stands as an important representative of its genus, contributing to the complex tapestry of microbial life and its ecological implications.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusLarkinella
SpeciesLarkinella punicea
Strainstrain ZZJ9

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Larkinella punicea strain ZZJ9 Contig60, whole genome shotgun

Gene Summary

Adenine Count

1929591 bp

Thymine Count

1930276 bp

Guanine Count

2055163 bp

Cytosine Count

2091296 bp

Genome Length

8006342 bp

Protein-coding Genes

6302 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine hydrolaseDUE52_14310Not AvailableNegative3520476 - 352204458351.0
t9ss c-terminal target domain-containing proteinDUE52_14315Not AvailablePositive3522258 - 352265314198.8
short chain dehydrogenaseDUE52_14320Not AvailableNegative3522730 - 352344625633.6
cupin domain-containing proteinDUE52_14325Not AvailablePositive3523586 - 352435028349.2
plp-dependent aminotransferase family proteinDUE52_14330Not AvailableNegative3524606 - 352607554587.1
pyridoxamine 5'-phosphate oxidase family proteinDUE52_14335Not AvailablePositive3526163 - 352678322827.3
sigma-70 family rna polymerase sigma factorDUE52_14340Not AvailablePositive3526895 - 352750623997.5
fecr family proteinDUE52_14345Not AvailablePositive3527576 - 352868541829.5
susc/raga family tonb-linked outer membrane proteinDUE52_14350Not AvailablePositive3528835 - 3532188120717.0
ragb/susd family nutrient uptake outer membrane proteinDUE52_14355Not AvailablePositive3532202 - 353364452533.6

Displaying genes 2841 – 2850 of 6346 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.