Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxo acid dehydrogenase subunit e2 | DUE52_13560 | Not Available | Negative | 3323786 - 3325111 | 48233.8 |
| competence/damage-inducible protein a | DUE52_13565 | Not Available | Negative | 3325122 - 3326375 | 45969.4 |
| duf4197 domain-containing protein | DUE52_13570 | Not Available | Positive | 3326570 - 3327322 | 26994.6 |
| gliding motility protein gldc | DUE52_13575 | Not Available | Positive | 3327525 - 3327875 | 13207.5 |
| duf255 domain-containing protein | DUE52_13580 | Not Available | Positive | 3327966 - 3329159 | 44586.8 |
| hypothetical protein | DUE52_13585 | Not Available | Negative | 3329163 - 3329711 | 21230.2 |
| mmcq/yjbr family dna-binding protein | DUE52_13590 | Not Available | Negative | 3329776 - 3330129 | 13337.0 |
| hypothetical protein | DUE52_13595 | Not Available | Negative | 3330126 - 3330314 | 7463.54 |
| 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | DUE52_13600 | Not Available | Negative | 3330405 - 3332423 | 74770.3 |
| ghmp kinase | DUE52_13605 | Not Available | Negative | 3332578 - 3333654 | 39442.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
