Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ssra-binding protein smpb | DUE52_13005 | Not Available | Negative | 3197694 - 3198155 | 18033.9 |
| omph family outer membrane protein | DUE52_13010 | Not Available | Negative | 3198718 - 3199314 | 22664.9 |
| hypothetical protein | DUE52_13015 | Not Available | Negative | 3199401 - 3199751 | 12720.1 |
| penicillin acylase family protein | DUE52_13020 | Not Available | Negative | 3199756 - 3202191 | 91309.3 |
| hypothetical protein | DUE52_13025 | Not Available | Positive | 3202395 - 3203921 | 58208.6 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | DUE52_13030 | Not Available | Positive | 3203997 - 3205238 | 46883.9 |
| sugar phosphate isomerase/epimerase | DUE52_13035 | Not Available | Positive | 3205403 - 3206245 | 31050.0 |
| hypothetical protein | DUE52_13040 | Not Available | Negative | 3206368 - 3207543 | 44017.6 |
| glycoside hydrolase | DUE52_13045 | Not Available | Negative | 3207642 - 3209183 | 59915.8 |
| hypothetical protein | DUE52_13050 | Not Available | Positive | 3209207 - 3209440 | 8972.12 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
