Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4974 domain-containing protein | DUE52_12750 | Not Available | Positive | 3135048 - 3136157 | 41853.6 |
| susc/raga family tonb-linked outer membrane protein | DUE52_12755 | Not Available | Positive | 3136378 - 3139827 | 125993.0 |
| ragb/susd family nutrient uptake outer membrane protein | DUE52_12760 | Not Available | Positive | 3139870 - 3141603 | 64612.4 |
| hypothetical protein | DUE52_12765 | Not Available | Positive | 3141686 - 3142672 | 36894.1 |
| pyrroloquinoline quinone-dependent dehydrogenase | DUE52_12770 | Not Available | Positive | 3142697 - 3144916 | 80975.9 |
| starvation-sensing protein rspa | DUE52_12775 | Not Available | Positive | 3145246 - 3146589 | 49367.3 |
| metallophosphoesterase | DUE52_12780 | Not Available | Positive | 3146858 - 3148090 | 46438.0 |
| beta-glucosidase | DUE52_12790 | Not Available | Negative | 3150206 - 3151813 | 61194.3 |
| ragb/susd family nutrient uptake outer membrane protein | DUE52_12795 | Not Available | Negative | 3151918 - 3153396 | 54204.1 |
| tonb-dependent receptor | DUE52_12800 | Not Available | Negative | 3153416 - 3156388 | 107426.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
