Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine hydroxymethyltransferase | DUE52_12140 | Not Available | Positive | 3002362 - 3003654 | 46958.3 |
| twin-arginine translocase subunit tatc | DUE52_12145 | Not Available | Positive | 3003764 - 3004642 | 33270.9 |
| hypothetical protein | DUE52_12150 | Not Available | Negative | 3004808 - 3005236 | 15376.5 |
| hypothetical protein | DUE52_12155 | Not Available | Negative | 3005610 - 3007112 | 56193.8 |
| hypothetical protein | DUE52_12160 | Not Available | Positive | 3007363 - 3008481 | 41789.7 |
| pirin family protein | DUE52_12165 | Not Available | Negative | 3008474 - 3009283 | 29012.3 |
| sigma-70 family rna polymerase sigma factor | DUE52_12170 | Not Available | Positive | 3009660 - 3010328 | 25638.7 |
| duf4974 domain-containing protein | DUE52_12175 | Not Available | Positive | 3010703 - 3011776 | 40882.3 |
| tonb-dependent receptor | DUE52_12180 | Not Available | Positive | 3011789 - 3015283 | 128014.0 |
| ragb/susd family nutrient uptake outer membrane protein | DUE52_12185 | Not Available | Positive | 3015316 - 3016788 | 55197.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
