Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysm peptidoglycan-binding domain-containing protein | DUE52_08105 | Not Available | Negative | 1988713 - 1989489 | 27926.4 |
| 5-(carboxyamino)imidazole ribonucleotide mutase | DUE52_08110 | Not Available | Negative | 1989564 - 1990046 | 16865.6 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | DUE52_08115 | Not Available | Negative | 1990131 - 1991282 | 42368.8 |
| gtra family protein | DUE52_08120 | Not Available | Positive | 1991573 - 1992064 | 18384.7 |
| atp-dependent helicase | DUE52_08125 | Not Available | Negative | 1992070 - 1995075 | 115808.0 |
| rna polymerase sigma-70 factor | DUE52_08130 | Not Available | Positive | 1995480 - 1996139 | 25562.2 |
| duf4974 domain-containing protein | DUE52_08135 | Not Available | Positive | 1996167 - 1997168 | 38264.8 |
| tonb-dependent receptor | DUE52_08140 | Not Available | Positive | 1997174 - 2000602 | 125504.0 |
| ragb/susd family nutrient uptake outer membrane protein | DUE52_08145 | Not Available | Positive | 2000615 - 2002027 | 51918.5 |
| fad-dependent oxidoreductase | DUE52_08150 | Not Available | Positive | 2002040 - 2003413 | 48870.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
