Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crispr-associated protein cas5 | DUE52_06235 | Not Available | Positive | 1536353 - 1537123 | 29286.2 |
| crispr-associated helicase cas3' | DUE52_06240 | Not Available | Positive | 1537120 - 1539576 | 94019.3 |
| dna repair protein | DUE52_06245 | Not Available | Positive | 1539590 - 1540279 | 26407.1 |
| crispr-associated endonuclease cas1 | DUE52_06250 | Not Available | Positive | 1540332 - 1541339 | 38051.6 |
| crispr-associated endonuclease cas2 | DUE52_06255 | Not Available | Positive | 1541344 - 1541634 | 11249.7 |
| crispr-associated protein cas4 | DUE52_06260 | Not Available | Positive | 1541678 - 1542250 | 23032.6 |
| pyrroloquinoline quinone-dependent dehydrogenase | DUE52_06265 | Not Available | Negative | 1551329 - 1553434 | 76173.5 |
| hypothetical protein | DUE52_06270 | Not Available | Positive | 1553433 - 1553618 | 6905.18 |
| hypothetical protein | DUE52_06275 | Not Available | Negative | 1553621 - 1554550 | 35130.7 |
| nuclear transport factor 2 family protein | DUE52_06280 | Not Available | Negative | 1554645 - 1554968 | 11724.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
