Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycogen debranching enzyme glgx | DUE52_05675 | Not Available | Positive | 1408587 - 1410689 | 79307.7 |
| duf3891 family protein | DUE52_05680 | Not Available | Negative | 1410768 - 1411496 | 28403.7 |
| pyridoxamine 5'-phosphate oxidase | DUE52_05685 | Not Available | Negative | 1411577 - 1412080 | 18909.1 |
| four-helix bundle copper-binding protein | DUE52_05690 | Not Available | Negative | 1412451 - 1412855 | 15508.8 |
| hypothetical protein | DUE52_05695 | Not Available | Negative | 1412942 - 1413136 | 7343.81 |
| pas domain s-box protein | DUE52_05700 | Not Available | Negative | 1413414 - 1414877 | 55301.0 |
| response regulator | DUE52_05705 | Not Available | Negative | 1414861 - 1415310 | 17117.3 |
| port family protein | DUE52_05710 | Not Available | Positive | 1415629 - 1416255 | 22391.8 |
| sigma-54-dependent fis family transcriptional regulator | DUE52_05715 | Not Available | Negative | 1416313 - 1417761 | 53923.9 |
| response regulator | DUE52_05720 | Not Available | Negative | 1417810 - 1418175 | 13603.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
