Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | DUE52_05575 | Not Available | Positive | 1379878 - 1380483 | 23378.3 |
| hypothetical protein | DUE52_05580 | Not Available | Positive | 1380537 - 1380917 | 14793.7 |
| hypothetical protein | DUE52_05585 | Not Available | Negative | 1380901 - 1381329 | 16076.5 |
| caspase family protein | DUE52_05590 | Not Available | Negative | 1381326 - 1382627 | 48789.5 |
| hypothetical protein | DUE52_05595 | Not Available | Negative | 1382773 - 1386462 | 138611.0 |
| chat domain-containing protein | DUE52_05600 | Not Available | Negative | 1386466 - 1388328 | 70640.3 |
| t9ss c-terminal target domain-containing protein | DUE52_05605 | Not Available | Positive | 1388838 - 1394288 | 196953.0 |
| hypothetical protein | DUE52_05610 | Not Available | Negative | 1394277 - 1394483 | 7262.19 |
| alpha/beta hydrolase | DUE52_05615 | Not Available | Positive | 1394654 - 1395589 | 35531.0 |
| glycosidase | DUE52_05620 | Not Available | Positive | 1395591 - 1396619 | 38230.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
