Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coagulation factor 5/8 type domain protein | DUE52_00485 | Not Available | Negative | 135602 - 137389 | 68485.8 |
| pas domain s-box protein | DUE52_00490 | Not Available | Positive | 137756 - 139450 | 64240.0 |
| sulfatase | DUE52_00495 | Not Available | Negative | 139456 - 140985 | 55981.8 |
| alpha-galactosidase | DUE52_00500 | Not Available | Negative | 141023 - 143029 | 74755.1 |
| alpha-galactosidase | DUE52_00505 | Not Available | Negative | 143127 - 145166 | 75282.1 |
| glycoside hydrolase family 92 protein | DUE52_00510 | Not Available | Negative | 145222 - 147612 | 90007.2 |
| ragb/susd family nutrient uptake outer membrane protein | DUE52_00515 | Not Available | Negative | 147732 - 149609 | 69087.9 |
| susc/raga family tonb-linked outer membrane protein | DUE52_00520 | Not Available | Negative | 149634 - 152975 | 122869.0 |
| fecr family protein | DUE52_00525 | Not Available | Negative | 153194 - 154276 | 41178.5 |
| rna polymerase sigma-70 factor | DUE52_00530 | Not Available | Negative | 154310 - 154978 | 26370.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
