Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Cytophagia
Order
Cytophagales
Family
Spirosomataceae
Genus
Larkinella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Cytophagia |
| Order | Cytophagales |
| Family | Spirosomataceae |
| Genus | Larkinella |
| Species | Larkinella punicea |
| Strain | strain ZZJ9 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1929591 bp
Thymine Count
1930276 bp
Guanine Count
2055163 bp
Cytosine Count
2091296 bp
Genome Length
8006342 bp
Protein-coding Genes
6302 genes
Non-Coding Genes
44 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin-disulfide reductase | DUE52_05275 | Not Available | Positive | 1301181 - 1302134 | 34114.7 |
| lysm peptidoglycan-binding domain-containing protein | DUE52_05280 | Not Available | Positive | 1302262 - 1303335 | 40299.4 |
| bacillithiol biosynthesis deacetylase bshb1 | DUE52_05285 | Not Available | Positive | 1303339 - 1304073 | 27607.0 |
| pyridoxamine 5'-phosphate oxidase | DUE52_05290 | Not Available | Negative | 1304151 - 1304792 | 24551.7 |
| duf349 domain-containing protein | DUE52_05295 | Not Available | Positive | 1304889 - 1307096 | 84430.2 |
| Trna-thr | Not Available | Not Available | Positive | 1307248 - 1307320 | Not Available |
| transposase family protein | DUE52_05305 | Not Available | Positive | 1307502 - 1307817 | 12516.0 |
| 3-deoxy-manno-octulosonate cytidylyltransferase | DUE52_05310 | Not Available | Negative | 1308058 - 1308786 | 27151.6 |
| hypothetical protein | DUE52_05315 | Not Available | Positive | 1308881 - 1309744 | 32356.2 |
| lysm peptidoglycan-binding domain-containing protein | DUE52_05320 | Not Available | Positive | 1309753 - 1310808 | 38861.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
