Shewanella putrefaciens strain 97

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella putrefaciens strain 97 is a Gram-negative bacterium characterized by the presence of flagella, which aids in motility. This strain has been isolated from the mangrove soil of the Sundarbans, a unique and biodiverse ecosystem. The Sundarbans mangrove habitat provides a distinct environmental niche, influencing the microbial community composition and functionality. This strain has a single replicon, indicating a streamlined genetic structure that may be advantageous for adaptation to its specific habitat. Notably, Shewanella putrefaciens strain 97 is associated with the host Phocoena phocoena, commonly known as the harbor porpoise. This association suggests a potential role for the bacterium in the microbiome of marine mammals, possibly impacting their health or digestion. The genetic information for this strain is cataloged under the accession number QNSC00000000.1, allowing for further studies and comparisons within the Shewanella genus. The ecological role of Shewanella putrefaciens strain 97 in the mangrove ecosystem could involve biogeochemical cycling, particularly in the decomposition of organic matter, contributing to nutrient availability in this environment. Understanding the interactions between such bacteria and their hosts can provide insights into the complex relationships within marine ecosystems and highlight the importance of microbial diversity in ecological health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella putrefaciens
Strainstrain 97

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmangrove soil; Sundarbans; Sundarbans mangrove
Biotic relationshipNot Available
Host(s)Phocoena phocoena
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella putrefaciens strain 97 Ga0227277_145, whole genome

Gene Summary

Adenine Count

1351868 bp

Thymine Count

1350539 bp

Guanine Count

1128156 bp

Cytosine Count

1123374 bp

Genome Length

4954542 bp

Protein-coding Genes

4241 genes

Non-Coding Genes

203 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
heme exporter protein dDET47_12610Not AvailablePositive4752215 - 47524187901.66
cytochrome c-type biogenesis protein ccmeDET47_12611Not AvailablePositive4752415 - 475290317594.3
abc-type uncharacterized transport system substrate-binding proteinDET47_12612Not AvailablePositive4753037 - 475405038648.4
lsu ribosomal protein l17pDET47_12613Not AvailableNegative4754108 - 475450314684.9
dna-directed rna polymerase subunit alphaDET47_12614Not AvailableNegative4754544 - 475553336158.3
ssu ribosomal protein s4pDET47_12615Not AvailableNegative4755558 - 475617823440.3
ssu ribosomal protein s11pDET47_12616Not AvailableNegative4756211 - 475660313892.7
ssu ribosomal protein s13pDET47_12617Not AvailableNegative4756619 - 475697513333.6
protein translocase subunit secy/sec61 alphaDET47_12619Not AvailableNegative4757228 - 475856848645.7
lsu ribosomal protein l15pDET47_12620Not AvailableNegative4758576 - 475901015097.7

Displaying genes 4271 – 4280 of 4444 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.