Shewanella putrefaciens strain 97

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella putrefaciens strain 97 is a Gram-negative bacterium characterized by the presence of flagella, which aids in motility. This strain has been isolated from the mangrove soil of the Sundarbans, a unique and biodiverse ecosystem. The Sundarbans mangrove habitat provides a distinct environmental niche, influencing the microbial community composition and functionality. This strain has a single replicon, indicating a streamlined genetic structure that may be advantageous for adaptation to its specific habitat. Notably, Shewanella putrefaciens strain 97 is associated with the host Phocoena phocoena, commonly known as the harbor porpoise. This association suggests a potential role for the bacterium in the microbiome of marine mammals, possibly impacting their health or digestion. The genetic information for this strain is cataloged under the accession number QNSC00000000.1, allowing for further studies and comparisons within the Shewanella genus. The ecological role of Shewanella putrefaciens strain 97 in the mangrove ecosystem could involve biogeochemical cycling, particularly in the decomposition of organic matter, contributing to nutrient availability in this environment. Understanding the interactions between such bacteria and their hosts can provide insights into the complex relationships within marine ecosystems and highlight the importance of microbial diversity in ecological health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella putrefaciens
Strainstrain 97

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmangrove soil; Sundarbans; Sundarbans mangrove
Biotic relationshipNot Available
Host(s)Phocoena phocoena
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella putrefaciens strain 97 Ga0227277_145, whole genome

Gene Summary

Adenine Count

1351868 bp

Thymine Count

1350539 bp

Guanine Count

1128156 bp

Cytosine Count

1123374 bp

Genome Length

4954542 bp

Protein-coding Genes

4241 genes

Non-Coding Genes

203 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iv pilus assembly protein pily1DET47_11949Not AvailableNegative4320598 - 4324104125262.0
type iv pilus assembly protein pilxDET47_11950Not AvailableNegative4324108 - 432456916296.9
type iv pilus assembly protein pilwDET47_11951Not AvailableNegative4324582 - 432555035996.0
type iv pilus assembly protein pilvDET47_11952Not AvailableNegative4325562 - 432612520427.4
4-hydroxy-3-methylbut-2-enyl diphosphate reductaseDET47_11953Not AvailableNegative4326333 - 432728934798.4
fkbp-type peptidyl-prolyl cis-trans isomerase slpaDET47_11954Not AvailableNegative4327291 - 432771314694.4
signal peptidase iiDET47_11955Not AvailableNegative4327710 - 432822519467.5
isoleucyl-trna synthetaseDET47_11956Not AvailableNegative4328235 - 4331009103890.0
fmn adenylyltransferase /riboflavin kinaseDET47_11957Not AvailableNegative4331090 - 433202534441.5
putative peptidoglycan lipid ii flippaseDET47_11958Not AvailableNegative4332091 - 433360855305.3

Displaying genes 3871 – 3880 of 4444 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.