Shewanella putrefaciens strain 97

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella putrefaciens strain 97 is a Gram-negative bacterium characterized by the presence of flagella, which aids in motility. This strain has been isolated from the mangrove soil of the Sundarbans, a unique and biodiverse ecosystem. The Sundarbans mangrove habitat provides a distinct environmental niche, influencing the microbial community composition and functionality. This strain has a single replicon, indicating a streamlined genetic structure that may be advantageous for adaptation to its specific habitat. Notably, Shewanella putrefaciens strain 97 is associated with the host Phocoena phocoena, commonly known as the harbor porpoise. This association suggests a potential role for the bacterium in the microbiome of marine mammals, possibly impacting their health or digestion. The genetic information for this strain is cataloged under the accession number QNSC00000000.1, allowing for further studies and comparisons within the Shewanella genus. The ecological role of Shewanella putrefaciens strain 97 in the mangrove ecosystem could involve biogeochemical cycling, particularly in the decomposition of organic matter, contributing to nutrient availability in this environment. Understanding the interactions between such bacteria and their hosts can provide insights into the complex relationships within marine ecosystems and highlight the importance of microbial diversity in ecological health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella putrefaciens
Strainstrain 97

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmangrove soil; Sundarbans; Sundarbans mangrove
Biotic relationshipNot Available
Host(s)Phocoena phocoena
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Shewanella putrefaciens strain 97 Ga0227277_145, whole genome

Gene Summary

Adenine Count

1351868 bp

Thymine Count

1350539 bp

Guanine Count

1128156 bp

Cytosine Count

1123374 bp

Genome Length

4954542 bp

Protein-coding Genes

4241 genes

Non-Coding Genes

203 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative membrane proteinDET47_11071Not AvailableNegative3259418 - 325975312712.0
nadh oxidoreductase hcrDET47_11072Not AvailableNegative3259910 - 326110043196.0
hydroxylamine reductase precursorDET47_11073Not AvailableNegative3261160 - 326282460180.7
chorismate mutase /prephenate dehydrogenaseDET47_11074Not AvailableNegative3263040 - 326417942739.8
3-deoxy-d-arabinoheptulosonate-7-phosphate synthaseDET47_11075Not AvailableNegative3264207 - 326529840143.0
lsu ribosomal protein l19pDET47_11076Not AvailableNegative3265559 - 326591213293.2
trna (guanine37-n(1)-) methyltransferaseDET47_11077Not AvailableNegative3265947 - 326669327427.8
16s rrna processing protein rimmDET47_11078Not AvailableNegative3266709 - 326723919932.8
ssu ribosomal protein s16pDET47_11079Not AvailableNegative3267260 - 32675119295.24
signal recognition particle subunit ffh/srp54 (srp54)DET47_11080Not AvailableNegative3267729 - 326910249960.6

Displaying genes 2931 – 2940 of 4444 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.