Aggregatibacter aphrophilus strain HK83

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Aggregatibacter

Description

Aggregatibacter aphrophilus strain HK83 is a Gram-negative, facultatively anaerobic rod-shaped bacterium primarily associated with hosts such as Homo sapiens and Canis lupus familiaris. This organism is characterized by having a single replicon and two membranes, which is typical for Gram-negative bacteria. Notably, it is immobile, indicated by the presence of flagella that do not confer motility. This strain thrives in mesophilic temperature ranges, making it well-suited for survival in warm-blooded hosts. Aggregatibacter aphrophilus has been implicated in various serious health conditions, including spondylodiscitis, endocarditis, liver abscesses, brain abscesses, meningitis, and several other infections, such as culture-negative endocarditis and mediastinitis. The organism's pathogenicity in humans highlights its potential as a significant opportunistic pathogen, particularly in immunocompromised individuals. The biotic relationship of Aggregatibacter aphrophilus is categorized as free-living, suggesting a level of independence from its hosts, yet it can also contribute to severe infections. This duality underscores the ecological role of the bacterium in both health and disease. Its presence in diverse infections emphasizes the need for further research into its pathogenic mechanisms and interactions within the host environment. Understanding these dynamics is crucial for developing effective treatments and preventive strategies against the infections caused by this bacterium.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusAggregatibacter
SpeciesAggregatibacter aphrophilus
Strainstrain HK83

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Aggregatibacter aphrophilus strain HK83
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Canis lupus familiaris
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Aggregatibacter aphrophilus strain HK83

Gene Summary

Adenine Count

691558 bp

Thymine Count

680959 bp

Guanine Count

496815 bp

Cytosine Count

506071 bp

Genome Length

2375403 bp

Protein-coding Genes

2175 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDOL88_04885Not AvailableNegative1000860 - 10011219287.86
eama/rhat family transporterDOL88_04890Not AvailableNegative1001122 - 100194830789.6
pyruvate formate lyase 1-activating proteinDOL88_04895Not AvailableNegative1002208 - 100294828206.0
antibiotic biosynthesis monooxygenaseDOL88_04900Not AvailableNegative1003008 - 100329511044.2
autonomous glycyl radical cofactor grcaDOL88_04905Not AvailableNegative1003380 - 10034813861.62
nucleotide exchange factor grpeDOL88_04910Not AvailablePositive1003644 - 100421921564.4
bifunctional trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmd/fad-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase mnmcDOL88_04915Not AvailableNegative1004328 - 100634676194.4
beta-ketoacyl-acp synthase iDOL88_04920Not AvailablePositive1006517 - 100773742515.7
response regulatorDOL88_04925Not AvailablePositive1007882 - 100973270156.5
galactose/methyl galactoside abc transporter permease mglcDOL88_04930Not AvailableNegative1009949 - 101095935704.5

Displaying genes 941 – 950 of 2233 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

242 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da

Displaying 1–10 of 242 metabolites

Health Effects

Health ConditionRelationReference
Culture-negative endocarditisCausesPMC12120218
Valvular infectionCausesPMC12120218
Sphenoid sinusitisCausesPMC12120218
Brain abscessCausesPMC12120218
MeningitisCausesPMC12120218
VentriculitisCausesPMC12120218
Epidural abscessesCausesPMC12120218
Orbital cellulitisCausesPMC12120218
CvstCausesPMC12120218
SovtCausesPMC12120218

Displaying health effects 1 – 10 of 20 in total