Aggregatibacter aphrophilus strain HK83

Gram-negativeRodNon-motileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pasteurellales

Family

Pasteurellaceae

Genus

Aggregatibacter

Description

Aggregatibacter aphrophilus strain HK83 is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic. This strain is primarily host-associated, indicating a close relationship with its host organisms, which can influence its metabolic activities and ecological interactions. As a member of the Aggregatibacter genus, A. aphrophilus is notable for its adaptability to various oxygen conditions, allowing it to thrive in both aerobic and anaerobic environments. This facultative nature contributes to its survival strategies within host-associated habitats, where fluctuating oxygen levels may occur. The Gram-negative cell wall structure of A. aphrophilus strain HK83 is characterized by a thin peptidoglycan layer surrounded by an outer membrane containing lipopolysaccharides, which may play a role in its interactions with the host's immune system. Understanding the specific ecological niches occupied by this strain could provide insights into its role in the microbiome of its host, potentially influencing host health and microbial community dynamics. The ability of A. aphrophilus strain HK83 to adapt to the varying conditions within host environments highlights the complexity of microbial life in symbiotic relationships, suggesting potential avenues for further research into its role in host-associated microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusAggregatibacter
SpeciesAggregatibacter aphrophilus
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Aggregatibacter aphrophilus strain HK83
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Aggregatibacter aphrophilus strain HK83

Accession NumberQMGS00000000.1

Gene Summary

Adenine Count

691558 bp

Thymine Count

680959 bp

Guanine Count

496815 bp

Cytosine Count

506071 bp

Genome Length

2375403 bp

Protein-coding Genes

2175 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
5s ribosomal rnaNot AvailableNot Available+377 - 492Not Available
hypothetical proteinDOL88_00005Not Available-1 - 93731888.6
is1595 family transposaseDOL88_00015Not Available+3663 - 475442316.8
Ncrna_class:srp_rnaNot AvailableNot Available+4258 - 4356Not Available
hypothetical proteinDOL88_00020Not Available+4783 - 526519080.0
molecular chaperone dnajDOL88_00025Not Available-5429 - 655341315.0
molecular chaperone dnakDOL88_00030Not Available-6956 - 893271191.2
duf945 family proteinDOL88_00035Not Available+9141 - 1057452604.7
arginine--trna ligaseDOL88_00040Not Available-10936 - 1266964881.6
voc family proteinDOL88_00045Not Available+12758 - 1334522315.7

Displaying genes 1 – 10 of 2233 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

242 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da
BASm0002282(2R)-2,3-dihydroxy-3-methylbutanoateC5H9O4Chemical structure of (2R)-2,3-dihydroxy-3-methylbutanoateNot available
Average133.1226Da
Monoisotopic133.0500838Da

Displaying 1–10 of 242 metabolites