Larkinella arboricola strain DSM 21851

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Larkinella

Description

Larkinella arboricola strain DSM 21851 is characterized by its single replicon structure, which is a notable feature in its genomic organization. The strain is cataloged under the accession number QLMC00000000.1, which provides a reference for its genetic sequence. While the specific ecological or biological roles of Larkinella arboricola strain DSM 21851 are not detailed in the provided traits, it can be inferred that its classification within the Larkinella genus suggests potential involvement in plant-associated environments. Members of this genus are often associated with various ecological niches, particularly in soil and plant microbiomes. Understanding the genomic characteristics of such strains is crucial, as they can offer insights into microbial diversity and the ecological functions they may serve. The single replicon indicates a streamlined genetic structure, which may reflect adaptations to specific environmental conditions or host interactions. In summary, Larkinella arboricola strain DSM 21851, with its single replicon and genomic representation under the provided accession number, contributes to the broader understanding of microbial life in ecological contexts, particularly in association with plants. Further studies could elucidate its specific roles in plant health and soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusLarkinella
SpeciesLarkinella arboricola
Strainstrain DSM 21851

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Larkinella arboricola strain DSM 21851 LX87DRAFT_scaffold00036.36,

Gene Summary

Adenine Count

1685171 bp

Thymine Count

1695500 bp

Guanine Count

1845912 bp

Cytosine Count

1789644 bp

Genome Length

7020148 bp

Protein-coding Genes

5667 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinLX87_00980Not AvailablePositive1225654 - 12257945052.06
heptosyltransferase-2LX87_00981Not AvailablePositive1225847 - 122684537373.2
small conductance mechanosensitive channelLX87_00982Not AvailablePositive1226901 - 122777932069.6
yd repeat-containing proteinLX87_00983Not AvailableNegative1227776 - 122860931298.7
putative zn-dependent proteaseLX87_00984Not AvailableNegative1228711 - 123011454163.2
nucleoside-diphosphate-sugar epimeraseLX87_00985Not AvailableNegative1230294 - 123132538413.4
methionyl-trna synthetaseLX87_00986Not AvailablePositive1231584 - 123366578660.1
uncharacterized protein duf4440LX87_00987Not AvailableNegative1233732 - 123416615610.0
alpha-l-fucosidase 2LX87_00988Not AvailableNegative1234272 - 123684595828.5
nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family)LX87_00989Not AvailableNegative1236895 - 123758124149.3

Displaying genes 981 – 990 of 5710 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.