Larkinella arboricola strain DSM 21851

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Spirosomataceae

Genus

Larkinella

Description

Larkinella arboricola strain DSM 21851 is characterized by its single replicon structure, which is a notable feature in its genomic organization. The strain is cataloged under the accession number QLMC00000000.1, which provides a reference for its genetic sequence. While the specific ecological or biological roles of Larkinella arboricola strain DSM 21851 are not detailed in the provided traits, it can be inferred that its classification within the Larkinella genus suggests potential involvement in plant-associated environments. Members of this genus are often associated with various ecological niches, particularly in soil and plant microbiomes. Understanding the genomic characteristics of such strains is crucial, as they can offer insights into microbial diversity and the ecological functions they may serve. The single replicon indicates a streamlined genetic structure, which may reflect adaptations to specific environmental conditions or host interactions. In summary, Larkinella arboricola strain DSM 21851, with its single replicon and genomic representation under the provided accession number, contributes to the broader understanding of microbial life in ecological contexts, particularly in association with plants. Further studies could elucidate its specific roles in plant health and soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilySpirosomataceae
GenusLarkinella
SpeciesLarkinella arboricola
Strainstrain DSM 21851

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Larkinella arboricola strain DSM 21851 LX87DRAFT_scaffold00036.36,

Gene Summary

Adenine Count

1685171 bp

Thymine Count

1695500 bp

Guanine Count

1845912 bp

Cytosine Count

1789644 bp

Genome Length

7020148 bp

Protein-coding Genes

5667 genes

Non-Coding Genes

43 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase sigma-70 factor (ecf subfamily)LX87_04958Not AvailableNegative6061287 - 606181420362.3
hypothetical proteinLX87_04959Not AvailableNegative6062102 - 606364955985.2
hypothetical proteinLX87_04960Not AvailableNegative6063867 - 606512945306.6
prolyl-trna synthetaseLX87_04961Not AvailablePositive6065321 - 606679356024.6
peptidylprolyl isomeraseLX87_04962Not AvailablePositive6066930 - 606738216086.0
fkbp-type peptidyl-prolyl cis-trans isomerase fkpaLX87_04963Not AvailableNegative6067556 - 606793913501.2
carboxypeptidase-like proteinLX87_04964Not AvailableNegative6068059 - 607058795035.2
putative metal-dependent hd superfamily phosphohydrolaseLX87_04965Not AvailablePositive6070823 - 607202545659.3
uncharacterized protein yjikLX87_04966Not AvailablePositive6072091 - 607293631220.6
calcineurin-like phosphoesterase family proteinLX87_04967Not AvailablePositive6072954 - 6076586137081.0

Displaying genes 4951 – 4960 of 5710 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.