Algoriphagus ratkowskyi strain DSM 22686

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cyclobacteriaceae

Genus

Algoriphagus

Description

Algoriphagus ratkowskyi strain DSM 22686 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain possesses a single replicon, which is indicative of its genomic organization. The genomic data for this strain can be accessed under the accession number QKZU00000000.1. As a member of the genus Algoriphagus, this bacterium is likely adapted to cold environments, as members of this genus are typically isolated from marine habitats or polar regions. The Gram-negative nature of Algoriphagus ratkowskyi suggests that it possesses an outer membrane rich in lipopolysaccharides, which is a common feature in this group and may play a role in its environmental resilience and interactions with other microorganisms. Biologically, the traits of Algoriphagus ratkowskyi strain DSM 22686 highlight its potential ecological role in nutrient cycling within its native habitats. Gram-negative bacteria are often involved in the degradation of organic materials, contributing to the recycling of nutrients in ecosystems. This ecological function is especially important in marine environments, where the breakdown of organic matter can significantly influence ecosystem dynamics and health. Furthermore, the single replicon may suggest a streamlined genomic organization, which could facilitate efficient adaptation to its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusAlgoriphagus
SpeciesAlgoriphagus ratkowskyi
Strainstrain DSM 22686

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsaline lake cyanobacterial mats; sea ice
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Algoriphagus ratkowskyi strain DSM 22686

Gene Summary

Adenine Count

1516046 bp

Thymine Count

1505068 bp

Guanine Count

980277 bp

Cytosine Count

983951 bp

Genome Length

4994706 bp

Protein-coding Genes

4263 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4fe-4s binding proteinLV84_00057Not AvailableNegative72469 - 7401358205.2
pyridine nucleotide-disulfide oxidoreductaseLV84_00058Not AvailableNegative74126 - 7548151629.0
uncharacterized protein duf547LV84_00059Not AvailableNegative75531 - 7629229036.8
rhodanese-related sulfurtransferaseLV84_00060Not AvailableNegative76382 - 7689119219.0
crp/fnr family transcriptional regulatorLV84_00061Not AvailableNegative76928 - 7758424020.2
type i restriction and modification enzyme subunit r-like proteinLV84_00062Not AvailableNegative77697 - 7817018565.0
dna uptake protein come-like dna-binding proteinLV84_00063Not AvailableNegative78220 - 7890326107.8
glutamyl-trna reductaseLV84_00064Not AvailablePositive79098 - 8036347835.1
wg repeat proteinLV84_00065Not AvailablePositive80457 - 8202258793.2
uncharacterized protein yqfa (upf0365 family)LV84_00066Not AvailableNegative82037 - 8305336132.9

Displaying genes 61 – 70 of 4307 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.