Algoriphagus ratkowskyi strain DSM 22686

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cyclobacteriaceae

Genus

Algoriphagus

Description

Algoriphagus ratkowskyi strain DSM 22686 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain possesses a single replicon, which is indicative of its genomic organization. The genomic data for this strain can be accessed under the accession number QKZU00000000.1. As a member of the genus Algoriphagus, this bacterium is likely adapted to cold environments, as members of this genus are typically isolated from marine habitats or polar regions. The Gram-negative nature of Algoriphagus ratkowskyi suggests that it possesses an outer membrane rich in lipopolysaccharides, which is a common feature in this group and may play a role in its environmental resilience and interactions with other microorganisms. Biologically, the traits of Algoriphagus ratkowskyi strain DSM 22686 highlight its potential ecological role in nutrient cycling within its native habitats. Gram-negative bacteria are often involved in the degradation of organic materials, contributing to the recycling of nutrients in ecosystems. This ecological function is especially important in marine environments, where the breakdown of organic matter can significantly influence ecosystem dynamics and health. Furthermore, the single replicon may suggest a streamlined genomic organization, which could facilitate efficient adaptation to its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusAlgoriphagus
SpeciesAlgoriphagus ratkowskyi
Strainstrain DSM 22686

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsaline lake cyanobacterial mats; sea ice
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Algoriphagus ratkowskyi strain DSM 22686

Gene Summary

Adenine Count

1516046 bp

Thymine Count

1505068 bp

Guanine Count

980277 bp

Cytosine Count

983951 bp

Genome Length

4994706 bp

Protein-coding Genes

4263 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)-dependent dehydrogenase (short-subunit alcohol dehydrogenase family)LV84_03195Not AvailablePositive3689634 - 369038626016.8
nitric oxide reductase subunit bLV84_03196Not AvailableNegative3690561 - 369277484058.9
badm/rrf2 family transcriptional regulatorLV84_03197Not AvailableNegative3692917 - 369335416281.9
2-dehydro-3-deoxyphosphogluconate aldolase/(4s)-4-hydroxy-2-oxoglutarate aldolaseLV84_03198Not AvailablePositive3693605 - 369425523015.8
glucokinaseLV84_03199Not AvailableNegative3694471 - 369533131184.7
glucosamine-6-phosphate deaminaseLV84_03200Not AvailableNegative3695418 - 369774587805.1
6-phosphogluconate dehydrogenase/gluconokinaseLV84_03201Not AvailablePositive3698250 - 369874718577.4
imidazolonepropionase-like amidohydrolaseLV84_03202Not AvailablePositive3698840 - 370020751190.6
aldose 1-epimeraseLV84_03203Not AvailablePositive3700327 - 370146641497.2
putative outer membrane proteinLV84_03204Not AvailablePositive3701567 - 370220223227.3

Displaying genes 3191 – 3200 of 4307 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.