Algoriphagus ratkowskyi strain DSM 22686

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Cyclobacteriaceae

Genus

Algoriphagus

Description

Algoriphagus ratkowskyi strain DSM 22686 is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain possesses a single replicon, which is indicative of its genomic organization. The genomic data for this strain can be accessed under the accession number QKZU00000000.1. As a member of the genus Algoriphagus, this bacterium is likely adapted to cold environments, as members of this genus are typically isolated from marine habitats or polar regions. The Gram-negative nature of Algoriphagus ratkowskyi suggests that it possesses an outer membrane rich in lipopolysaccharides, which is a common feature in this group and may play a role in its environmental resilience and interactions with other microorganisms. Biologically, the traits of Algoriphagus ratkowskyi strain DSM 22686 highlight its potential ecological role in nutrient cycling within its native habitats. Gram-negative bacteria are often involved in the degradation of organic materials, contributing to the recycling of nutrients in ecosystems. This ecological function is especially important in marine environments, where the breakdown of organic matter can significantly influence ecosystem dynamics and health. Furthermore, the single replicon may suggest a streamlined genomic organization, which could facilitate efficient adaptation to its ecological niche.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyCyclobacteriaceae
GenusAlgoriphagus
SpeciesAlgoriphagus ratkowskyi
Strainstrain DSM 22686

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsaline lake cyanobacterial mats; sea ice
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Algoriphagus ratkowskyi strain DSM 22686

Gene Summary

Adenine Count

1516046 bp

Thymine Count

1505068 bp

Guanine Count

980277 bp

Cytosine Count

983951 bp

Genome Length

4994706 bp

Protein-coding Genes

4263 genes

Non-Coding Genes

44 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized protein duf4091LV84_01911Not AvailablePositive2190211 - 219180661084.2
glycosyltransferase involved in cell wall biosynthesisLV84_01912Not AvailablePositive2191799 - 219288741694.2
capsule assembly protein wziLV84_01913Not AvailablePositive2192893 - 219457864875.6
udp-n-acetyl-d-galactosamine dehydrogenaseLV84_01914Not AvailablePositive2194791 - 219612249092.0
polysaccharide export outer membrane proteinLV84_01915Not AvailablePositive2196188 - 219701830912.4
capsular exopolysaccharide synthesis family proteinLV84_01916Not AvailablePositive2197026 - 219938389844.2
methionyl-trna formyltransferaseLV84_01917Not AvailablePositive2199411 - 220060445040.4
lipopolysaccharide transport system permease proteinLV84_01918Not AvailablePositive2200666 - 220152632887.9
abc-type polysaccharide/polyol phosphate transport system atpase subunitLV84_01919Not AvailablePositive2201533 - 220279846671.8
hypothetical proteinLV84_01920Not AvailablePositive2202834 - 220372133775.2

Displaying genes 1911 – 1920 of 4307 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.