Paraburkholderia tropica strain SIr-6529

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia tropica strain SIr-6529 is a rod-shaped bacterium characterized by the presence of flagella, which likely contributes to its motility. This strain is notable for having a single replicon, indicating a streamlined genetic organization. The genomic data for this strain is accessible under the accession number QKZC00000000.1. The morphological and genetic traits of Paraburkholderia tropica strain SIr-6529 suggest that it possesses adaptations suited for diverse environments. The rod shape may enhance nutrient uptake and facilitate colonization of surfaces, while the flagella allow for mobility in liquid environments, which is advantageous for locating resources or escaping unfavorable conditions. Ecologically, members of the Paraburkholderia genus are known for their role in nitrogen fixation and interactions with plants, which can enhance soil fertility and promote plant growth. The motility provided by the flagella in strain SIr-6529 may also play a role in its ecological interactions, potentially aiding in its colonization of plant roots or other substrates. Understanding these traits helps elucidate the ecological functions of this strain and its potential applications in agriculture or bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia tropica
Strainstrain SIr-6529

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia tropica strain SIr-6529 Ga0215842_192, whole

Gene Summary

Adenine Count

1560329 bp

Thymine Count

1561092 bp

Guanine Count

2874039 bp

Cytosine Count

2853052 bp

Genome Length

8849105 bp

Protein-coding Genes

7705 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitt/taut family transport system atp-binding proteinC7399_12522Not AvailableNegative6851570 - 685240929318.7
alkylation response protein aidb-like acyl-coa dehydrogenaseC7399_12523Not AvailableNegative6852406 - 685352138617.9
ahpd family alkylhydroperoxidaseC7399_12524Not AvailableNegative6853518 - 685411720615.3
arac family transcriptional regulatorC7399_12525Not AvailableNegative6854283 - 685528436056.4
pimeloyl-acp methyl ester carboxylesteraseC7399_12526Not AvailableNegative6855318 - 685630436213.5
type vi secretion system secreted protein hcpC7399_12527Not AvailablePositive6856449 - 685696719008.3
type vi secretion system protein impkC7399_12528Not AvailableNegative6857049 - 685787330854.2
type vi secretion system protein impjC7399_12529Not AvailableNegative6857875 - 685921250163.0
type vi secretion system protein vasdC7399_12530Not AvailableNegative6859215 - 686021335235.8
fha domain proteinC7399_12531Not AvailableNegative6860210 - 686155348896.3

Displaying genes 6081 – 6090 of 7828 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.