Paraburkholderia tropica strain SIr-6529

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia tropica strain SIr-6529 is a rod-shaped bacterium characterized by the presence of flagella, which likely contributes to its motility. This strain is notable for having a single replicon, indicating a streamlined genetic organization. The genomic data for this strain is accessible under the accession number QKZC00000000.1. The morphological and genetic traits of Paraburkholderia tropica strain SIr-6529 suggest that it possesses adaptations suited for diverse environments. The rod shape may enhance nutrient uptake and facilitate colonization of surfaces, while the flagella allow for mobility in liquid environments, which is advantageous for locating resources or escaping unfavorable conditions. Ecologically, members of the Paraburkholderia genus are known for their role in nitrogen fixation and interactions with plants, which can enhance soil fertility and promote plant growth. The motility provided by the flagella in strain SIr-6529 may also play a role in its ecological interactions, potentially aiding in its colonization of plant roots or other substrates. Understanding these traits helps elucidate the ecological functions of this strain and its potential applications in agriculture or bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia tropica
Strainstrain SIr-6529

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia tropica strain SIr-6529 Ga0215842_192, whole

Gene Summary

Adenine Count

1560329 bp

Thymine Count

1561092 bp

Guanine Count

2874039 bp

Cytosine Count

2853052 bp

Genome Length

8849105 bp

Protein-coding Genes

7705 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized protein ydiu (upf0061 family)C7399_12460Not AvailablePositive6760060 - 676165858713.8
peptide-methionine (r)-s-oxide reductaseC7399_12461Not AvailablePositive6761723 - 676214215830.2
intracellular septation protein aC7399_12462Not AvailablePositive6762248 - 676278120268.5
bola protein family transcriptional regulatorC7399_12463Not AvailablePositive6762778 - 676308910770.9
peptidyl-prolyl cis-trans isomerase cC7399_12464Not AvailablePositive6763141 - 676392028588.3
fic family proteinC7399_12465Not AvailableNegative6763982 - 676510341628.7
phosphoribosylformylglycinamidine synthaseC7399_12466Not AvailableNegative6765293 - 6769378146645.0
glycine/d-amino acid oxidase-like deaminating enzymeC7399_12467Not AvailablePositive6769940 - 677123546302.6
hydroxyethylthiazole kinase-like uncharacterized protein yjef/hydroxyethylthiazole kinase-like uncharacterized protein yjefC7399_12468Not AvailablePositive6771435 - 677308755243.3
glucose-6-phosphate isomeraseC7399_12469Not AvailablePositive6773415 - 677503459308.8

Displaying genes 6001 – 6010 of 7828 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.