Paraburkholderia tropica strain SIr-6529

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia tropica strain SIr-6529 is a rod-shaped bacterium characterized by the presence of flagella, which likely contributes to its motility. This strain is notable for having a single replicon, indicating a streamlined genetic organization. The genomic data for this strain is accessible under the accession number QKZC00000000.1. The morphological and genetic traits of Paraburkholderia tropica strain SIr-6529 suggest that it possesses adaptations suited for diverse environments. The rod shape may enhance nutrient uptake and facilitate colonization of surfaces, while the flagella allow for mobility in liquid environments, which is advantageous for locating resources or escaping unfavorable conditions. Ecologically, members of the Paraburkholderia genus are known for their role in nitrogen fixation and interactions with plants, which can enhance soil fertility and promote plant growth. The motility provided by the flagella in strain SIr-6529 may also play a role in its ecological interactions, potentially aiding in its colonization of plant roots or other substrates. Understanding these traits helps elucidate the ecological functions of this strain and its potential applications in agriculture or bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia tropica
Strainstrain SIr-6529

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia tropica strain SIr-6529 Ga0215842_192, whole

Gene Summary

Adenine Count

1560329 bp

Thymine Count

1561092 bp

Guanine Count

2874039 bp

Cytosine Count

2853052 bp

Genome Length

8849105 bp

Protein-coding Genes

7705 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
luxr family transcriptional regulatorC7399_104237Not AvailableNegative1967711 - 196888342325.9
uncharacterized protein duf4337C7399_104238Not AvailablePositive1969216 - 196983922300.2
hypothetical proteinC7399_104239Not AvailableNegative1969932 - 197040516812.3
uncharacterized protein duf2501C7399_104240Not AvailableNegative1970608 - 197110516408.5
transposaseC7399_104241Not AvailablePositive1971845 - 197308344728.3
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomeraseC7399_104242Not AvailableNegative1973513 - 197503355406.5
putative colanic acid biosynthesis udp-glucose lipid carrier transferaseC7399_104243Not AvailablePositive1975538 - 197691751587.3
udpglucose 6-dehydrogenaseC7399_104244Not AvailablePositive1976995 - 197841351763.7
protein tyrosine phosphataseC7399_104245Not AvailablePositive1978457 - 197890616597.8
polysaccharide export outer membrane proteinC7399_104246Not AvailablePositive1978903 - 198007542307.6

Displaying genes 1791 – 1800 of 7828 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.