Paraburkholderia tropica strain SIr-6529

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Paraburkholderia

Description

Paraburkholderia tropica strain SIr-6529 is a rod-shaped bacterium characterized by the presence of flagella, which likely contributes to its motility. This strain is notable for having a single replicon, indicating a streamlined genetic organization. The genomic data for this strain is accessible under the accession number QKZC00000000.1. The morphological and genetic traits of Paraburkholderia tropica strain SIr-6529 suggest that it possesses adaptations suited for diverse environments. The rod shape may enhance nutrient uptake and facilitate colonization of surfaces, while the flagella allow for mobility in liquid environments, which is advantageous for locating resources or escaping unfavorable conditions. Ecologically, members of the Paraburkholderia genus are known for their role in nitrogen fixation and interactions with plants, which can enhance soil fertility and promote plant growth. The motility provided by the flagella in strain SIr-6529 may also play a role in its ecological interactions, potentially aiding in its colonization of plant roots or other substrates. Understanding these traits helps elucidate the ecological functions of this strain and its potential applications in agriculture or bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusParaburkholderia
SpeciesParaburkholderia tropica
Strainstrain SIr-6529

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Paraburkholderia tropica strain SIr-6529 Ga0215842_192, whole

Gene Summary

Adenine Count

1560329 bp

Thymine Count

1561092 bp

Guanine Count

2874039 bp

Cytosine Count

2853052 bp

Genome Length

8849105 bp

Protein-coding Genes

7705 genes

Non-Coding Genes

123 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phytanoyl-coa hydroxylaseC7399_10146Not AvailablePositive48415 - 4917928362.4
uncharacterized protein duf3185C7399_10147Not AvailableNegative49266 - 494727046.75
l-glyceraldehyde 3-phosphate reductaseC7399_10148Not AvailablePositive49701 - 5074438580.6
fatty acid desaturaseC7399_10149Not AvailablePositive50933 - 5201839562.4
Ncrna_class:autocatalytically_spliced_intronNot AvailableNot AvailablePositive50945 - 51091Not Available
hypothetical proteinC7399_10150Not AvailableNegative52185 - 523706424.25
ynfm family putative membrane transporterC7399_10151Not AvailableNegative52748 - 5401644026.4
nodt family efflux transporter outer membrane factor (omf) lipoproteinC7399_10152Not AvailableNegative54125 - 5569955207.5
rnd family efflux transporter mfp subunitC7399_10153Not AvailableNegative55696 - 5691343464.4
multidrug efflux pump subunit acrbC7399_10154Not AvailableNegative56950 - 60123114439.0

Displaying genes 121 – 130 of 7828 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.