Rhodopseudomonas palustris strain XCP

BacilliMotilefacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Rhodopseudomonas

Description

Rhodopseudomonas palustris strain XCP is a Gram-negative, facultative anaerobic bacterium characterized by its bacilli shape and the presence of flagella, which contribute to its mobility. This microorganism is free-living and can thrive in both aquatic and terrestrial environments, specifically favoring stratified aquatic habitats. It has an optimal growth temperature of 25°C and falls within the mesophilic temperature range, indicating its preference for moderate thermal conditions. Rhodopseudomonas palustris strain XCP possesses a single replicon, reflecting a streamlined genetic structure that is typical for many bacteria in its category. Its ability to adapt to varying oxygen levels suggests a versatile metabolic capacity, allowing it to utilize different energy sources in diverse environmental conditions. The ecological role of Rhodopseudomonas palustris strain XCP is significant, particularly in aquatic ecosystems where it can contribute to nutrient cycling and organic matter degradation. Its facultative anaerobic nature enables it to participate in both aerobic and anaerobic processes, potentially influencing the dynamics of microbial communities in stratified waters. Overall, the traits of this strain highlight its adaptability and ecological importance in both aquatic and terrestrial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusRhodopseudomonas
SpeciesRhodopseudomonas palustris
Strainstrain XCP

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Rhodopseudomonas palustris strain XCP
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsfacultative anaerobe
Optimal temperature25
Temperature rangeMesophilic
Habitataquatic; stratified aquatic environments; terrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodopseudomonas palustris strain XCP PROK_000042, whole genome

Gene Summary

Adenine Count

975211 bp

Thymine Count

968409 bp

Guanine Count

1811129 bp

Cytosine Count

1834173 bp

Genome Length

5590663 bp

Protein-coding Genes

4970 genes

Non-Coding Genes

156 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methionyl-trna formyltransferaseDNX69_18140Not AvailablePositive3899495 - 390042733001.4
trna pseudouridine(38-40) synthase truaDNX69_18145Not AvailablePositive3900602 - 390133926900.2
succinyl-diaminopimelate desuccinylaseDNX69_18150Not AvailableNegative3901460 - 390261740591.9
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseDNX69_18155Not AvailableNegative3902625 - 390347029765.8
giy-yig nuclease family proteinDNX69_18160Not AvailablePositive3903783 - 390408211865.2
pyrimidine 5'-nucleotidaseDNX69_18165Not AvailableNegative3904153 - 390485426445.6
hypothetical proteinDNX69_18170Not AvailableNegative3904851 - 390584935271.1
acetylglutamate kinaseDNX69_18175Not AvailableNegative3906071 - 390696731489.5
duf423 domain-containing proteinDNX69_18180Not AvailableNegative3907081 - 390745512475.6
yiha family ribosome biogenesis gtp-binding proteinDNX69_18185Not AvailableNegative3907455 - 390810523421.3

Displaying genes 3581 – 3590 of 5126 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.