Acidithiobacillus ferrooxidans strain CCM 4253

Gram-negativeSpirillaNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Acidithiobacillia

Order

Acidithiobacillales

Family

Acidithiobacillaceae

Genus

Acidithiobacillus

Description

Acidithiobacillus ferrooxidans strain CCM 4253 is a specialized, obligate chemoautolithotrophic bacterium characterized by its gram-negative cell wall structure and spirilla shape. This strain requires oxygen for growth, classifying it as an aerobe. It is non-motile, possessing flagella, which suggests that its mobility may be limited to specific environmental conditions rather than active movement. This organism thrives optimally at a temperature of 30°C and falls within the mesophilic temperature range. It has a single replicon and is surrounded by two membranes, typical of gram-negative bacteria. A notable characteristic of A. ferrooxidans CCM 4253 is its free-living biotic relationship, indicating that it does not rely on other organisms for survival. Acidithiobacillus ferrooxidans strains are well-known for their role in bioleaching processes, where they contribute to the oxidation of iron and sulfide minerals. This metabolic capability not only aids in the extraction of metals but also influences the biogeochemical cycling of elements in their natural habitats. The strain's unique traits make it a valuable organism for studying microbial interactions with minerals and for biotechnological applications in mining and environmental remediation. Access to the genomic data (accession QKQP00000000.1) may facilitate further research into its metabolic pathways and ecological roles within its specialized habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAcidithiobacillia
OrderAcidithiobacillales
FamilyAcidithiobacillaceae
GenusAcidithiobacillus
SpeciesAcidithiobacillus ferrooxidans
Strainstrain CCM 4253

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Acidithiobacillus ferrooxidans strain CCM 4253
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature30
Temperature rangeMesophilic
HabitatSpecialized
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceObligate chemoautolithotroph
PathogenicityNot Available

Genome Summary

Acidithiobacillus ferrooxidans strain CCM 4253 Contig15, whole

Gene Summary

Adenine Count

670933 bp

Thymine Count

651512 bp

Guanine Count

917308 bp

Cytosine Count

956731 bp

Genome Length

3196562 bp

Protein-coding Genes

3059 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
murein transglycosylaseDN052_00310Not AvailablePositive64621 - 6579342240.0
trz/atz family hydrolaseDN052_00315Not AvailablePositive65873 - 6719847798.5
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigDN052_00320Not AvailablePositive67195 - 6790225758.7
phosphoglycolate phosphataseDN052_00325Not AvailablePositive67895 - 6856923983.8
dmt family transporterDN052_00330Not AvailableNegative68531 - 6940031451.1
succinyldiaminopimelate transaminaseDN052_00335Not AvailablePositive69637 - 7084243792.5
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseDN052_00340Not AvailablePositive70856 - 7168029429.3
succinyl-diaminopimelate desuccinylaseDN052_00345Not AvailablePositive71692 - 7284041157.9
septal ring lytic transglycosylase rlpa family proteinDN052_00350Not AvailablePositive72830 - 7365428328.9
sulfotransferaseDN052_00355Not AvailablePositive73666 - 7462837169.4

Displaying genes 61 – 70 of 1247 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

53 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000542HgHgChemical structure of HgNot available
Average200.59Da
Monoisotopic201.9706256Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da
BASm0002305(S)-2-ethyl-2-hydroxy-3-oxobutanoateC6H9O4Chemical structure of (S)-2-ethyl-2-hydroxy-3-oxobutanoateNot available
Average145.135Da
Monoisotopic145.0506324Da
BASm0002307(2R,3R)-2,3-dihydroxy-3-methylpentanoateC6H11O4Chemical structure of (2R,3R)-2,3-dihydroxy-3-methylpentanoateNot available
Average147.1491Da
Monoisotopic147.06573384Da
BASm0002751(S)-4-amino-5-oxopentanoateC5H9NO3Chemical structure of (S)-4-amino-5-oxopentanoateNot available
Average131.1299Da
Monoisotopic131.0582432Da

Displaying 1–10 of 53 metabolites

Health Effects

No health effects information available for this bacterium.