Pseudomonas sp. TKO29

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. TKO29 is characterized by having a single replicon, which is indicative of its genetic structure. The accession number for this strain is QKLM00000000.1, which serves as a unique identifier for its genomic sequence in biological databases. Pseudomonas species are known for their versatility and adaptability in various environments, often playing significant roles in ecological systems. They are typically found in soil, water, and plant-associated environments, where they can contribute to nutrient cycling and the degradation of organic matter. The presence of Pseudomonas sp. TKO29 may suggest its potential role in bioremediation or other ecological functions, although specific traits or capabilities of this strain have not been provided. The single replicon structure of Pseudomonas sp. TKO29 could facilitate its genetic stability and adaptability, allowing it to respond efficiently to environmental changes. This trait may also influence its ability to acquire or lose genetic material, which is a common feature among Pseudomonas species. In summary, Pseudomonas sp. TKO29, with its single replicon and distinct genomic accession, represents the diverse capabilities of Pseudomonas species. While the specific ecological roles of this strain remain undefined, its genetic configuration hints at potential adaptability and functionality within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. TKO29
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. TKO29
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. TKO29 PairedContig_121, whole genome shotgun

Gene Summary

Adenine Count

1251054 bp

Thymine Count

1280295 bp

Guanine Count

2192770 bp

Cytosine Count

2141270 bp

Genome Length

6865389 bp

Protein-coding Genes

6008 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseDNK61_00790Not AvailablePositive152471 - 15393451857.9
Ncrna_class:srp_rnaNot AvailableNot AvailablePositive152543 - 152639Not Available
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseDNK61_00795Not AvailablePositive153927 - 15530947726.5
phospho-n-acetylmuramoyl-pentapeptide- transferaseDNK61_00800Not AvailablePositive155309 - 15639139305.4
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseDNK61_00805Not AvailablePositive156397 - 15774347805.4
putative lipid ii flippase ftswDNK61_00810Not AvailablePositive157740 - 15895744351.6
undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferaseDNK61_00815Not AvailablePositive158947 - 16001737619.0
udp-n-acetylmuramate--l-alanine ligaseDNK61_00820Not AvailablePositive160010 - 16146752455.4
d-alanine--d-alanine ligaseDNK61_00825Not AvailablePositive161464 - 16242033754.5
cell division protein ftsq/divibDNK61_00830Not AvailablePositive162425 - 16329132379.4

Displaying genes 301 – 310 of 6187 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.