Pseudomonas sp. TKO29

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. TKO29 is characterized by having a single replicon, which is indicative of its genetic structure. The accession number for this strain is QKLM00000000.1, which serves as a unique identifier for its genomic sequence in biological databases. Pseudomonas species are known for their versatility and adaptability in various environments, often playing significant roles in ecological systems. They are typically found in soil, water, and plant-associated environments, where they can contribute to nutrient cycling and the degradation of organic matter. The presence of Pseudomonas sp. TKO29 may suggest its potential role in bioremediation or other ecological functions, although specific traits or capabilities of this strain have not been provided. The single replicon structure of Pseudomonas sp. TKO29 could facilitate its genetic stability and adaptability, allowing it to respond efficiently to environmental changes. This trait may also influence its ability to acquire or lose genetic material, which is a common feature among Pseudomonas species. In summary, Pseudomonas sp. TKO29, with its single replicon and distinct genomic accession, represents the diverse capabilities of Pseudomonas species. While the specific ecological roles of this strain remain undefined, its genetic configuration hints at potential adaptability and functionality within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. TKO29
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. TKO29
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. TKO29 PairedContig_121, whole genome shotgun

Gene Summary

Adenine Count

1251054 bp

Thymine Count

1280295 bp

Guanine Count

2192770 bp

Cytosine Count

2141270 bp

Genome Length

6865389 bp

Protein-coding Genes

6008 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
gtpase hflxDNK61_14510Not AvailableNegative3076621 - 307792248932.7
rna-binding protein hfqDNK61_14515Not AvailableNegative3077935 - 30781959441.4
trna (adenosine(37)-n6)-dimethylallyltransferase miaaDNK61_14520Not AvailableNegative3078288 - 307925935626.9
dna mismatch repair endonuclease mutlDNK61_14525Not AvailableNegative3079259 - 308116969960.6
n-acetylmuramoyl-l-alanine amidaseDNK61_14530Not AvailableNegative3081166 - 308258149764.7
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsaeDNK61_14535Not AvailableNegative3082597 - 308306717033.5
nad(p)h-hydrate dehydrataseDNK61_14540Not AvailableNegative3083055 - 308391528738.1
trna epoxyqueuosine(34) reductase quegDNK61_14545Not AvailablePositive3083979 - 308505840312.2
trimeric intracellular cation channel family proteinDNK61_14550Not AvailableNegative3085040 - 308565122375.3
oligoribonucleaseDNK61_14555Not AvailableNegative3085772 - 308631420657.6

Displaying genes 2911 – 2920 of 6187 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.