Pseudomonas sp. TKO29

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. TKO29 is characterized by having a single replicon, which is indicative of its genetic structure. The accession number for this strain is QKLM00000000.1, which serves as a unique identifier for its genomic sequence in biological databases. Pseudomonas species are known for their versatility and adaptability in various environments, often playing significant roles in ecological systems. They are typically found in soil, water, and plant-associated environments, where they can contribute to nutrient cycling and the degradation of organic matter. The presence of Pseudomonas sp. TKO29 may suggest its potential role in bioremediation or other ecological functions, although specific traits or capabilities of this strain have not been provided. The single replicon structure of Pseudomonas sp. TKO29 could facilitate its genetic stability and adaptability, allowing it to respond efficiently to environmental changes. This trait may also influence its ability to acquire or lose genetic material, which is a common feature among Pseudomonas species. In summary, Pseudomonas sp. TKO29, with its single replicon and distinct genomic accession, represents the diverse capabilities of Pseudomonas species. While the specific ecological roles of this strain remain undefined, its genetic configuration hints at potential adaptability and functionality within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. TKO29
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. TKO29
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. TKO29 PairedContig_121, whole genome shotgun

Gene Summary

Adenine Count

1251054 bp

Thymine Count

1280295 bp

Guanine Count

2192770 bp

Cytosine Count

2141270 bp

Genome Length

6865389 bp

Protein-coding Genes

6008 genes

Non-Coding Genes

179 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii secretion system protein gspiDNK61_11080Not AvailablePositive2355426 - 235577012759.2
type ii secretion system protein gspjDNK61_11085Not AvailablePositive2355767 - 235636622108.5
general secretion pathway protein gspkDNK61_11090Not AvailablePositive2356443 - 235724629528.7
general secretion pathway protein gsplDNK61_11095Not AvailablePositive2357253 - 235839242605.6
general secretion pathway protein gspmDNK61_11100Not AvailablePositive2358396 - 235889618449.1
bax inhibitor (bi)-1/ycca family proteinDNK61_11105Not AvailableNegative2358972 - 235964324249.1
Trna-serNot AvailableNot AvailablePositive2359767 - 2359854Not Available
membrane-bound pqq-dependent dehydrogenase, glucose/quinate/shikimate familyDNK61_11115Not AvailablePositive2361931 - 236433387656.8
hypothetical proteinDNK61_11120Not AvailablePositive2364361 - 23646369518.53
hypothetical proteinDNK61_11210Not AvailableNegative2377368 - 237790420106.2

Displaying genes 2251 – 2260 of 6187 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.