Pseudomonas koreensis strain LB-090714

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain LB-090714 is a Gram-negative bacterium predominantly found in the rhizosphere of rice in Korean agricultural soil. This strain possesses a single replicon, indicating a streamlined genetic structure typical of certain bacteria within the Pseudomonas genus. Notably, Pseudomonas koreensis has been associated with infectious keratitis, a serious eye condition that can lead to vision impairment or loss if not treated properly. This highlights its potential pathogenicity, particularly in human hosts, underscoring the importance of understanding its ecological behavior and interactions within agricultural environments. The strain's presence in the rice rhizosphere suggests it may play a role in the soil ecosystem, potentially influencing plant health and nutrient cycling. This ecological insight points to the dual nature of Pseudomonas koreensis: while it can be a beneficial organism in soil environments, its pathogenic potential in humans necessitates careful consideration in agricultural practices, particularly in regions where rice is a staple crop. Overall, the characterization of Pseudomonas koreensis strain LB-090714 emphasizes the complexity of microbial interactions in agricultural settings and the need for continued research into the health implications of soil-dwelling bacteria. Accessions for this strain can be found under the identifier QJRR00000000.1, facilitating further study and exploration of its biological properties.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain LB-090714

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain LB-090714
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain LB-090714

Gene Summary

Adenine Count

1215652 bp

Thymine Count

1215590 bp

Guanine Count

1826143 bp

Cytosine Count

1812822 bp

Genome Length

6070527 bp

Protein-coding Genes

5331 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
galactarate dehydrataseDMX04_26455Not AvailablePositive5729840 - 573139356392.3
aec family transporterDMX04_26460Not AvailablePositive5731678 - 573261933488.7
4-carboxymuconolactone decarboxylaseDMX04_26465Not AvailableNegative5732720 - 573310013792.5
conjugal transfer protein trarDMX04_26470Not AvailableNegative5733097 - 573416437976.1
septal ring lytic transglycosylase rlpa family proteinDMX04_26475Not AvailableNegative5734205 - 573457613365.9
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatbDMX04_26480Not AvailableNegative5734795 - 573624052891.2
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gataDMX04_26485Not AvailableNegative5736251 - 573770251726.6
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatcDMX04_26490Not AvailableNegative5737719 - 573800610261.2
rod shape-determining proteinDMX04_26495Not AvailablePositive5738218 - 573925537005.8
rod shape-determining protein mrecDMX04_26500Not AvailablePositive5739396 - 574049938845.2

Displaying genes 5181 – 5190 of 5495 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total