Pseudomonas koreensis strain LB-090714

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain LB-090714 is a Gram-negative bacterium predominantly found in the rhizosphere of rice in Korean agricultural soil. This strain possesses a single replicon, indicating a streamlined genetic structure typical of certain bacteria within the Pseudomonas genus. Notably, Pseudomonas koreensis has been associated with infectious keratitis, a serious eye condition that can lead to vision impairment or loss if not treated properly. This highlights its potential pathogenicity, particularly in human hosts, underscoring the importance of understanding its ecological behavior and interactions within agricultural environments. The strain's presence in the rice rhizosphere suggests it may play a role in the soil ecosystem, potentially influencing plant health and nutrient cycling. This ecological insight points to the dual nature of Pseudomonas koreensis: while it can be a beneficial organism in soil environments, its pathogenic potential in humans necessitates careful consideration in agricultural practices, particularly in regions where rice is a staple crop. Overall, the characterization of Pseudomonas koreensis strain LB-090714 emphasizes the complexity of microbial interactions in agricultural settings and the need for continued research into the health implications of soil-dwelling bacteria. Accessions for this strain can be found under the identifier QJRR00000000.1, facilitating further study and exploration of its biological properties.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain LB-090714

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain LB-090714
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain LB-090714

Gene Summary

Adenine Count

1215652 bp

Thymine Count

1215590 bp

Guanine Count

1826143 bp

Cytosine Count

1812822 bp

Genome Length

6070527 bp

Protein-coding Genes

5331 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna alkylation response proteinDMX04_20260Not AvailableNegative4375563 - 437721259982.7
hybrid sensor histidine kinase/response regulatorDMX04_20265Not AvailableNegative4377308 - 437965986530.1
bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinaseDMX04_20270Not AvailablePositive4379961 - 438075828348.1
thiamine phosphate synthaseDMX04_20275Not AvailablePositive4380777 - 438140022160.6
glutamate-1-semialdehyde-2,1-aminomutaseDMX04_20280Not AvailablePositive4381416 - 438269945029.1
sel1 repeat family proteinDMX04_20285Not AvailablePositive4382924 - 438347819983.7
duf1820 family proteinDMX04_20290Not AvailableNegative4383669 - 438399812586.4
trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miabDMX04_20295Not AvailablePositive4384131 - 438545949423.8
phoh family proteinDMX04_20300Not AvailablePositive4385674 - 438666637264.1
rrna maturation rnase ybeyDMX04_20305Not AvailablePositive4386659 - 438715318666.6

Displaying genes 3981 – 3990 of 5495 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total