Pseudomonas koreensis strain LB-090714

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain LB-090714 is a Gram-negative bacterium predominantly found in the rhizosphere of rice in Korean agricultural soil. This strain possesses a single replicon, indicating a streamlined genetic structure typical of certain bacteria within the Pseudomonas genus. Notably, Pseudomonas koreensis has been associated with infectious keratitis, a serious eye condition that can lead to vision impairment or loss if not treated properly. This highlights its potential pathogenicity, particularly in human hosts, underscoring the importance of understanding its ecological behavior and interactions within agricultural environments. The strain's presence in the rice rhizosphere suggests it may play a role in the soil ecosystem, potentially influencing plant health and nutrient cycling. This ecological insight points to the dual nature of Pseudomonas koreensis: while it can be a beneficial organism in soil environments, its pathogenic potential in humans necessitates careful consideration in agricultural practices, particularly in regions where rice is a staple crop. Overall, the characterization of Pseudomonas koreensis strain LB-090714 emphasizes the complexity of microbial interactions in agricultural settings and the need for continued research into the health implications of soil-dwelling bacteria. Accessions for this strain can be found under the identifier QJRR00000000.1, facilitating further study and exploration of its biological properties.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain LB-090714

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain LB-090714
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain LB-090714

Gene Summary

Adenine Count

1215652 bp

Thymine Count

1215590 bp

Guanine Count

1826143 bp

Cytosine Count

1812822 bp

Genome Length

6070527 bp

Protein-coding Genes

5331 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
acyltransferaseDMX04_14350Not AvailableNegative3086873 - 308795540683.6
glycosyl transferaseDMX04_14355Not AvailableNegative3088140 - 308916536605.7
nad-dependent dehydrataseDMX04_14360Not AvailableNegative3089165 - 309012134013.0
glycosyl transferaseDMX04_14365Not AvailableNegative3090118 - 309104135372.3
glucose-1-phosphate thymidylyltransferaseDMX04_14370Not AvailableNegative3091090 - 309198032865.4
dtdp-4-dehydrorhamnose reductaseDMX04_14375Not AvailableNegative3091977 - 309287032196.4
dtdp-glucose 4,6-dehydrataseDMX04_14380Not AvailableNegative3092867 - 309394340410.2
duf1049 domain-containing proteinDMX04_14385Not AvailableNegative3094167 - 30944068668.34
integration host factor subunit betaDMX04_14390Not AvailableNegative3094437 - 309473311014.2
hypothetical proteinDMX04_14395Not AvailableNegative3094887 - 30951659908.02

Displaying genes 2831 – 2840 of 5495 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total