Pseudomonas koreensis strain LB-090714

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas koreensis strain LB-090714 is a Gram-negative bacterium predominantly found in the rhizosphere of rice in Korean agricultural soil. This strain possesses a single replicon, indicating a streamlined genetic structure typical of certain bacteria within the Pseudomonas genus. Notably, Pseudomonas koreensis has been associated with infectious keratitis, a serious eye condition that can lead to vision impairment or loss if not treated properly. This highlights its potential pathogenicity, particularly in human hosts, underscoring the importance of understanding its ecological behavior and interactions within agricultural environments. The strain's presence in the rice rhizosphere suggests it may play a role in the soil ecosystem, potentially influencing plant health and nutrient cycling. This ecological insight points to the dual nature of Pseudomonas koreensis: while it can be a beneficial organism in soil environments, its pathogenic potential in humans necessitates careful consideration in agricultural practices, particularly in regions where rice is a staple crop. Overall, the characterization of Pseudomonas koreensis strain LB-090714 emphasizes the complexity of microbial interactions in agricultural settings and the need for continued research into the health implications of soil-dwelling bacteria. Accessions for this strain can be found under the identifier QJRR00000000.1, facilitating further study and exploration of its biological properties.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas koreensis
Strainstrain LB-090714

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas koreensis strain LB-090714
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatKorean agricultural soil; rice rhizosphere
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas koreensis strain LB-090714

Gene Summary

Adenine Count

1215652 bp

Thymine Count

1215590 bp

Guanine Count

1826143 bp

Cytosine Count

1812822 bp

Genome Length

6070527 bp

Protein-coding Genes

5331 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hth domain-containing proteinDMX04_09745Not AvailableNegative2106563 - 210708119920.1
alpha/beta hydrolaseDMX04_09750Not AvailablePositive2107469 - 210834432223.6
c4-dicarboxylate transporter dctaDMX04_09755Not AvailablePositive2108442 - 210974945488.1
3-isopropylmalate dehydratase large subunitDMX04_09760Not AvailablePositive2109952 - 211137351008.1
3-isopropylmalate dehydratase small subunitDMX04_09765Not AvailablePositive2111376 - 211198122086.5
lysr family transcriptional regulatorDMX04_09770Not AvailableNegative2112038 - 211295534528.3
quinone oxidoreductaseDMX04_09775Not AvailableNegative2113086 - 211408734587.4
lysr family transcriptional regulatorDMX04_09780Not AvailablePositive2114196 - 211507732563.0
amidohydrolaseDMX04_09785Not AvailableNegative2115232 - 211666251308.1
abc transporter permeaseDMX04_09790Not AvailableNegative2116703 - 211750628685.4

Displaying genes 1931 – 1940 of 5495 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Infectious keratitisCausesPMC7747071

Displaying health effects 1 – 1 of 1 in total