Hymenobacter edaphi strain NL

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter edaphi strain NL is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain has been documented with a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability in various environments. The genomic sequence of this strain is accessible under the accession number QHKM00000000.1, providing a resource for further study and characterization. The classification of Hymenobacter edaphi within the Hymenobacter genus places it among a group of bacteria known for their resilience in diverse ecological niches. Members of the Hymenobacter genus are typically found in soil and other terrestrial environments, where they play a critical role in nutrient cycling and organic matter decomposition. This ecological function is particularly important in maintaining soil health and fertility. Given its Gram-negative nature and rod shape, Hymenobacter edaphi strain NL may possess specific biochemical pathways that facilitate its survival and interaction with other microorganisms in its habitat. Understanding the genetic and metabolic characteristics of this strain could provide insights into its ecological role, particularly in relation to soil microbiomes and their contributions to ecosystem services. The availability of its genomic data allows for potential investigations into its functional capabilities and interactions within its environment, paving the way for future research into its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter edaphi
Strainstrain NL

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter edaphi strain NL NODE_56_length_449_cov_0.981366,

Gene Summary

Adenine Count

1043714 bp

Thymine Count

1035671 bp

Guanine Count

1982307 bp

Cytosine Count

1979635 bp

Genome Length

6041327 bp

Protein-coding Genes

4849 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
xanthine dehydrogenase family protein molybdopterin-binding subunitDLM85_23515Not AvailableNegative5739874 - 574212680216.1
xanthine dehydrogenase family protein subunit mDLM85_23520Not AvailableNegative5742152 - 574320436905.5
hypothetical proteinDLM85_23525Not AvailableNegative5743218 - 574423735338.1
acyl-coa dehydrogenaseDLM85_23530Not AvailablePositive5744433 - 574560841469.7
pig-l family deacetylaseDLM85_23535Not AvailablePositive5745601 - 574634426463.7
methyltransferaseDLM85_23540Not AvailablePositive5746371 - 574697022633.2
glycosyltransferase family 2 proteinDLM85_23545Not AvailableNegative5746967 - 574825347011.9
gmc family oxidoreductaseDLM85_23550Not AvailableNegative5748357 - 575003060516.6
gluconate 2-dehydrogenase subunit 3 family proteinDLM85_23555Not AvailableNegative5750086 - 575068521810.7
short-chain dehydrogenaseDLM85_23560Not AvailableNegative5750738 - 575165533180.4

Displaying genes 4641 – 4650 of 4902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.