Hymenobacter edaphi strain NL

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter edaphi strain NL is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain has been documented with a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability in various environments. The genomic sequence of this strain is accessible under the accession number QHKM00000000.1, providing a resource for further study and characterization. The classification of Hymenobacter edaphi within the Hymenobacter genus places it among a group of bacteria known for their resilience in diverse ecological niches. Members of the Hymenobacter genus are typically found in soil and other terrestrial environments, where they play a critical role in nutrient cycling and organic matter decomposition. This ecological function is particularly important in maintaining soil health and fertility. Given its Gram-negative nature and rod shape, Hymenobacter edaphi strain NL may possess specific biochemical pathways that facilitate its survival and interaction with other microorganisms in its habitat. Understanding the genetic and metabolic characteristics of this strain could provide insights into its ecological role, particularly in relation to soil microbiomes and their contributions to ecosystem services. The availability of its genomic data allows for potential investigations into its functional capabilities and interactions within its environment, paving the way for future research into its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter edaphi
Strainstrain NL

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter edaphi strain NL NODE_56_length_449_cov_0.981366,

Gene Summary

Adenine Count

1043714 bp

Thymine Count

1035671 bp

Guanine Count

1982307 bp

Cytosine Count

1979635 bp

Genome Length

6041327 bp

Protein-coding Genes

4849 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDLM85_21990Not AvailablePositive5404269 - 540466414685.7
duf721 domain-containing proteinDLM85_21995Not AvailableNegative5405068 - 540538512000.8
dna replication and repair protein recfDLM85_22000Not AvailableNegative5405457 - 540656642328.6
pyruvate dehydrogenase (acetyl-transferring) e1 component subunit alphaDLM85_22005Not AvailablePositive5406873 - 540783535527.3
cytochrome c biosynthesis proteinDLM85_22010Not AvailablePositive5407896 - 540866928535.4
6,7-dimethyl-8-ribityllumazine synthaseDLM85_22015Not AvailablePositive5408886 - 540936217106.3
is5/is1182 family transposaseDLM85_22020Not AvailablePositive5409440 - 54095303417.03
is5/is1182 family transposaseDLM85_22025Not AvailablePositive5409531 - 54096474477.54
hypothetical proteinDLM85_22030Not AvailablePositive5409831 - 541041521602.3
dihydrofolate reductaseDLM85_22035Not AvailablePositive5410794 - 541282776669.1

Displaying genes 4341 – 4350 of 4902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.