Hymenobacter edaphi strain NL

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter edaphi strain NL is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain has been documented with a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability in various environments. The genomic sequence of this strain is accessible under the accession number QHKM00000000.1, providing a resource for further study and characterization. The classification of Hymenobacter edaphi within the Hymenobacter genus places it among a group of bacteria known for their resilience in diverse ecological niches. Members of the Hymenobacter genus are typically found in soil and other terrestrial environments, where they play a critical role in nutrient cycling and organic matter decomposition. This ecological function is particularly important in maintaining soil health and fertility. Given its Gram-negative nature and rod shape, Hymenobacter edaphi strain NL may possess specific biochemical pathways that facilitate its survival and interaction with other microorganisms in its habitat. Understanding the genetic and metabolic characteristics of this strain could provide insights into its ecological role, particularly in relation to soil microbiomes and their contributions to ecosystem services. The availability of its genomic data allows for potential investigations into its functional capabilities and interactions within its environment, paving the way for future research into its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter edaphi
Strainstrain NL

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter edaphi strain NL NODE_56_length_449_cov_0.981366,

Gene Summary

Adenine Count

1043714 bp

Thymine Count

1035671 bp

Guanine Count

1982307 bp

Cytosine Count

1979635 bp

Genome Length

6041327 bp

Protein-coding Genes

4849 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ragb/susd family nutrient uptake outer membrane proteinDLM85_01515Not AvailableNegative404061 - 40569860045.8
susc/raga family proteinDLM85_01520Not AvailableNegative405710 - 408718108886.0
alpha/beta hydrolaseDLM85_01525Not AvailablePositive409088 - 41051251430.7
anthranilate synthase component i family proteinDLM85_01530Not AvailablePositive410997 - 41247854774.8
aminodeoxychorismate/anthranilate synthase component iiDLM85_01535Not AvailablePositive412529 - 41311321435.6
anthranilate phosphoribosyltransferaseDLM85_01540Not AvailablePositive413205 - 41420035446.6
indole-3-glycerol phosphate synthase trpcDLM85_01545Not AvailablePositive414386 - 41521930836.1
phosphoribosylanthranilate isomeraseDLM85_01550Not AvailablePositive415234 - 41590823168.2
tryptophan synthase subunit betaDLM85_01555Not AvailablePositive415974 - 41716143153.6
tryptophan synthase subunit alphaDLM85_01560Not AvailablePositive417322 - 41813129147.9

Displaying genes 301 – 310 of 4902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.