Hymenobacter edaphi strain NL

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Hymenobacteraceae

Genus

Hymenobacter

Description

Hymenobacter edaphi strain NL is a Gram-negative bacterium characterized by its rod-shaped morphology. This strain has been documented with a single replicon, indicating a streamlined genomic organization that may contribute to its adaptability in various environments. The genomic sequence of this strain is accessible under the accession number QHKM00000000.1, providing a resource for further study and characterization. The classification of Hymenobacter edaphi within the Hymenobacter genus places it among a group of bacteria known for their resilience in diverse ecological niches. Members of the Hymenobacter genus are typically found in soil and other terrestrial environments, where they play a critical role in nutrient cycling and organic matter decomposition. This ecological function is particularly important in maintaining soil health and fertility. Given its Gram-negative nature and rod shape, Hymenobacter edaphi strain NL may possess specific biochemical pathways that facilitate its survival and interaction with other microorganisms in its habitat. Understanding the genetic and metabolic characteristics of this strain could provide insights into its ecological role, particularly in relation to soil microbiomes and their contributions to ecosystem services. The availability of its genomic data allows for potential investigations into its functional capabilities and interactions within its environment, paving the way for future research into its ecological significance.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyHymenobacteraceae
GenusHymenobacter
SpeciesHymenobacter edaphi
Strainstrain NL

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hymenobacter edaphi strain NL NODE_56_length_449_cov_0.981366,

Gene Summary

Adenine Count

1043714 bp

Thymine Count

1035671 bp

Guanine Count

1982307 bp

Cytosine Count

1979635 bp

Genome Length

6041327 bp

Protein-coding Genes

4849 genes

Non-Coding Genes

53 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nadph-dependent fmn reductaseDLM85_15550Not AvailableNegative3814545 - 381507219006.1
succinate dehydrogenase/fumarate reductase iron-sulfur subunitDLM85_15555Not AvailableNegative3815223 - 381597827114.3
fumarate reductase/succinate dehydrogenase flavoprotein subunitDLM85_15560Not AvailableNegative3816112 - 381804671776.0
succinate dehydrogenaseDLM85_15565Not AvailableNegative3818068 - 381874225506.2
gliding motility-associated c-terminal domain-containing proteinDLM85_15570Not AvailablePositive3818989 - 3821850102530.0
hypothetical proteinDLM85_15575Not AvailablePositive3822085 - 38222977741.29
[acyl-carrier-protein] s-malonyltransferaseDLM85_15580Not AvailablePositive3822503 - 382338730992.0
hypothetical proteinDLM85_15585Not AvailablePositive3823455 - 382461841818.8
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinaseDLM85_15590Not AvailableNegative3824631 - 382513418238.1
dienelactone hydrolaseDLM85_15595Not AvailableNegative3825337 - 382620931982.4

Displaying genes 3071 – 3080 of 4902 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.