Acuticoccus sediminis strain PTG4-2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Amorphaceae

Genus

Acuticoccus

Description

Acuticoccus sediminis strain PTG4-2 is characterized by having a single replicon, which is significant for its genomic structure. The strain is cataloged under the accession number QHHQ00000000.1, indicating its availability for further research and analysis within biological databases. This bacterium is likely to be of interest due to its ecological niche, potentially contributing to sedimentary environments. The presence of a single replicon may influence its genetic stability and adaptability, which are important factors in microbial survival and competition within such habitats. Understanding the genomic characteristics of Acuticoccus sediminis strain PTG4-2 can provide insights into its metabolic capabilities and ecological roles. The study of its genome and traits may reveal how this strain interacts with its environment, participates in nutrient cycling, and contributes to the overall health of sediment ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyAmorphaceae
GenusAcuticoccus
SpeciesAcuticoccus sediminis
Strainstrain PTG4-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Acuticoccus sediminis strain PTG4-2 contig44, whole genome shotgun

Gene Summary

Adenine Count

1192019 bp

Thymine Count

1200259 bp

Guanine Count

2692558 bp

Cytosine Count

2678702 bp

Genome Length

7763538 bp

Protein-coding Genes

6646 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
plasmid replication initiator repaDLJ53_34255Not AvailableNegative7709878 - 771094540639.6
type iv secretion system protein vird4DLJ53_34260Not AvailableNegative7711514 - 771295952114.3
hypothetical proteinDLJ53_34265Not AvailableNegative7712971 - 771461460234.1
endonucleaseDLJ53_34270Not AvailableNegative7714686 - 771516217527.6
duf533 domain-containing proteinDLJ53_34275Not AvailablePositive7716007 - 771676226098.6
hypothetical proteinDLJ53_34280Not AvailableNegative7716854 - 771826652359.4
hypothetical proteinDLJ53_34285Not AvailableNegative7718727 - 771923618561.2
vapc toxin family pin domain ribonucleaseDLJ53_34290Not AvailableNegative7719516 - 771991714279.5
abrb/maze/spovt family dna-binding domain-containing proteinDLJ53_34295Not AvailableNegative7719914 - 77201478634.43
vapc toxin family pin domain ribonucleaseDLJ53_34300Not AvailableNegative7720307 - 772070214219.3

Displaying genes 6761 – 6770 of 6807 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.