Acuticoccus sediminis strain PTG4-2

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Amorphaceae

Genus

Acuticoccus

Description

Acuticoccus sediminis strain PTG4-2 is characterized by having a single replicon, which is significant for its genomic structure. The strain is cataloged under the accession number QHHQ00000000.1, indicating its availability for further research and analysis within biological databases. This bacterium is likely to be of interest due to its ecological niche, potentially contributing to sedimentary environments. The presence of a single replicon may influence its genetic stability and adaptability, which are important factors in microbial survival and competition within such habitats. Understanding the genomic characteristics of Acuticoccus sediminis strain PTG4-2 can provide insights into its metabolic capabilities and ecological roles. The study of its genome and traits may reveal how this strain interacts with its environment, participates in nutrient cycling, and contributes to the overall health of sediment ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyAmorphaceae
GenusAcuticoccus
SpeciesAcuticoccus sediminis
Strainstrain PTG4-2

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Acuticoccus sediminis strain PTG4-2 contig44, whole genome shotgun

Gene Summary

Adenine Count

1192019 bp

Thymine Count

1200259 bp

Guanine Count

2692558 bp

Cytosine Count

2678702 bp

Genome Length

7763538 bp

Protein-coding Genes

6646 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional repressorDLJ53_06740Not AvailableNegative1556202 - 155659113519.2
two-component system response regulatorDLJ53_06745Not AvailablePositive1556984 - 155758022317.1
nitrate transporterDLJ53_06750Not AvailablePositive1557577 - 155883645506.3
nitrate abc transporter substrate-binding proteinDLJ53_06755Not AvailablePositive1559090 - 156048751365.7
nitrate abc transporter permeaseDLJ53_06760Not AvailablePositive1560592 - 156168038932.9
nitrate/sulfonate/bicarbonate abc transporter atp-binding proteinDLJ53_06765Not AvailablePositive1561691 - 156346064265.7
gaf domain-containing proteinDLJ53_06770Not AvailablePositive1563484 - 156445534367.4
nitrite reductase large subunitDLJ53_06775Not AvailablePositive1564518 - 156699289015.8
nitrite reductase (nad(p)h) small subunitDLJ53_06780Not AvailablePositive1566989 - 156731511215.5
nitrate reductaseDLJ53_06785Not AvailablePositive1567315 - 156999393831.4

Displaying genes 1491 – 1500 of 6807 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.