Caldicoprobacter oshimai

rodanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Caldicoprobacterales

Family

Caldicoprobacteraceae

Genus

Caldicoprobacter

Description

Caldicoprobacter oshimai is a Gram-positive, anaerobic, rod-shaped bacterium characterized by its thermophilic nature, with an optimal growth temperature of 45°C. This organism is non-motile and capable of forming spores, which is a key trait that allows it to survive in extreme environments. C. oshimai has a single replicon, indicating a streamlined genetic structure that is often associated with organisms adapted to specific ecological niches. The thermophilic characteristics of C. oshimai suggest it thrives in high-temperature environments, which can be found in geothermal areas or hot springs. Its ability to form spores is particularly significant for its survival, as spores can withstand harsh conditions that would otherwise be detrimental to vegetative cells. The presence of a single replicon may enable C. oshimai to exhibit efficient replication and adaptability within its thermophilic habitat. The ecological insights regarding C. oshimai highlight its potential role in biogeochemical cycles in high-temperature environments, where it may contribute to organic matter decomposition or other microbial processes. Its specific adaptations to anaerobic conditions and thermophilic temperatures make it a subject of interest for studies related to microbial ecology and potential biotechnological applications in extreme conditions. The accession number for this organism is QGUV00000000.2, which can be used for further genomic studies and comparisons with other microorganisms.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderCaldicoprobacterales
FamilyCaldicoprobacteraceae
GenusCaldicoprobacter
SpeciesCaldicoprobacter oshimai
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperature45
Temperature rangethermophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationspore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

MAG: Caldicoprobacter oshimai isolate ZC4RG32

Gene Summary

Adenine Count

465034 bp

Thymine Count

456979 bp

Guanine Count

409847 bp

Cytosine Count

405606 bp

Genome Length

1737466 bp

Protein-coding Genes

1645 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad-dependent dna ligase ligaDIU64_006825Not AvailablePositive1420062 - 142205975129.7
peptidoglycan-binding domain-containing proteinDIU64_006830Not AvailablePositive1422193 - 142260714121.1
single-stranded-dna-specific exonuclease c-terminal domain-containing proteinDIU64_006835Not AvailablePositive1422608 - 142339631037.5
adenine phosphoribosyltransferaseDIU64_006840Not AvailablePositive1423399 - 142391718642.7
bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseDIU64_006845Not AvailablePositive1424022 - 142621783823.2
d-aminoacyl-trna deacylaseDIU64_006850Not AvailablePositive1426293 - 142674216376.9
mbl fold metallo-hydrolaseDIU64_006855Not AvailablePositive1426763 - 142740423157.9
coproporphyrinogen dehydrogenase hemzDIU64_006860Not AvailablePositive1427683 - 142923358064.2
dna-binding proteinDIU64_006865Not AvailablePositive1429223 - 142964215440.4
dead/deah box helicase family proteinDIU64_006870Not AvailableNegative1430035 - 1432656101569.0

Displaying genes 1361 – 1370 of 1687 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.